igf2bp1 (Danio rerio)
KH,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1)
PF00076 (RRM_1) 		IPR018111
IPR000504 		ENSDARG00000061478 T22193_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
IGF2BP1
M296_0.6 		Homo sapiens AAGCACCCGUU SELEX
Cook et al.(2011)
359_12507992 		0.863
IGF2BP1
M293_0.6 		Homo sapiens Sequence logo not available CAU PAR-clip
Cook et al.(2011)
355_20371350 		0.863
IGF2BP3
M295_0.6 		Homo sapiens Sequence logo not available CAUU PAR-clip
Cook et al.(2011)
357_20371350 		0.809
IGF2BP3
M163_0.6 		Homo sapiens AMAHWCA RNAcompete
Ray et al.(2013)
RNCMPT00172 		0.809
IGF2BP2
M294_0.6 		Homo sapiens Sequence logo not available CAU PAR-clip
Cook et al.(2011)
356_20371350 		0.754
IGF2BP2
M032_0.6 		Homo sapiens VMAHWCA RNAcompete
Ray et al.(2013)
RNCMPT00033 		0.754
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000082159 RRM 4 69
ENSDARP00000082159 RRM 83 150
ENSDARP00000082159 KH 200 263
ENSDARP00000082159 KH 281 346
ENSDARP00000082159 KH 409 472
ENSDARP00000082159 KH 491 555

Links

Other KH,RRM family RBPs
Other Danio rerio RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
IGF2BP1 Gasterosteus aculeatus ENSGACG00000005318 I 0.921
IGF2BP1 Tetraodon nigroviridis ENSTNIG00000013986 I 0.891
IGF2BP1 Anolis carolinensis ENSACAG00000006199 I 0.883
IF2B1_CHICK Gallus gallus ENSGALG00000001293 I 0.875
Ame_R004727 Ailuropoda melanoleuca Ame_R004727 I 0.863
IGF2BP1 Bos taurus ENSBTAG00000011736 I 0.863
IGF2BP1 Homo sapiens ENSG00000159217 D 0.863
IGF2BP1 Equus caballus ENSECAG00000009723 I 0.863
IGF2BP1 Loxodonta africana ENSLAFG00000002048 I 0.863
ENSPPYG00000008913 Pongo pygmaeus ENSPPYG00000008913 I 0.863
LOC100395821 Callithrix jacchus ENSCJAG00000007258 I 0.863
IGF2BP1 Microcebus murinus ENSMICG00000013324 I 0.860
Igf2bp1 Mus musculus ENSMUSG00000013415 I 0.860
Igf2bp1 Rattus norvegicus ENSRNOG00000006122 I 0.860
IGF2BP1 Pan troglodytes ENSPTRG00000009368 I 0.860
IGF2BP1 Canis familiaris ENSCAFG00000016907 I 0.858
IGF2BP1 Monodelphis domestica ENSMODG00000012268 I 0.858
IGF2BP1 Macaca mulatta ENSMMUG00000011533 I 0.858
IGF2BP1 Oryctolagus cuniculus ENSOCUG00000004411 I 0.855
IGF2BP3 Taeniopygia guttata ENSTGUG00000002773 I 0.845
IF2B3_CHICK Gallus gallus ENSGALG00000010961 I 0.845
igf2bp3 Xenopus tropicalis ENSXETG00000007396 I 0.842
IGF2BP1 Gorilla gorilla ENSGGOG00000008872 I 0.840
IGF2BP1 Tursiops truncatus ENSTTRG00000007197 I 0.838
O73932 Xenopus laevis O73932 I 0.837
O57526 Xenopus laevis O57526 I 0.837
AAI70479 Xenopus laevis AAI70479 I 0.837
AAI70477 Xenopus laevis AAI70477 I 0.837
AAB97457 Xenopus laevis AAB97457 I 0.837
AAI70196 Xenopus laevis AAI70196 I 0.837
AAC18598 Xenopus laevis AAC18598 I 0.837
AAI70224 Xenopus laevis AAI70224 I 0.837
AAC18597 Xenopus laevis AAC18597 I 0.837
AAH57700 Xenopus laevis AAH57700 I 0.837
AAC41285 Xenopus laevis AAC41285 I 0.837
IGF2BP3 Anolis carolinensis ENSACAG00000013538 I 0.835
IGF2BP3 Tursiops truncatus ENSTTRG00000008921 I 0.817
IGF2BP1 Otolemur garnettii ENSOGAG00000001270 I 0.817
IGF2BP3 Ornithorhynchus anatinus ENSOANG00000014203 I 0.815
IGF2BP1 Cavia porcellus ENSCPOG00000020174 I 0.814
Igf2bp3 Dipodomys ordii ENSDORG00000014185 I 0.814
IGF2BP3 Homo sapiens ENSG00000136231 D 0.809
IGF2BP3 Callithrix jacchus ENSCJAG00000001499 I 0.809
XR_022832.1 Pan troglodytes ENSPTRG00000018986 I 0.809
IGF2BP3 Macaca mulatta ENSMMUG00000004839 I 0.807
IGF2BP3 Monodelphis domestica ENSMODG00000001014 I 0.805
Igf2bp3 Mus musculus ENSMUSG00000029814 I 0.799
D3ZB84_RAT Rattus norvegicus ENSRNOG00000009052 I 0.799
IGF2BP3 Microcebus murinus ENSMICG00000013683 I 0.795
igf2bp3 Danio rerio ENSDARG00000010266 I 0.794
IGF2BP3 Oryzias latipes ENSORLG00000004712 I 0.791
IGF2BP3 Tetraodon nigroviridis ENSTNIG00000017755 I 0.776
IGF2BP3 Takifugu rubripes ENSTRUG00000006094 I 0.774
igf2bp2a Danio rerio ENSDARG00000003421 I 0.769
Igf2bp1 Dipodomys ordii ENSDORG00000014371 I 0.766
Igf2bp2 Rattus norvegicus ENSRNOG00000025946 I 0.759
IGF2BP2 Oryctolagus cuniculus ENSOCUG00000005057 I 0.756
Igf2bp2 Mus musculus ENSMUSG00000033581 I 0.756
XR_025001.1 Pan troglodytes ENSPTRG00000015705 I 0.754
IGF2BP2 Homo sapiens ENSG00000073792 D 0.754
IGF2BP2 Macaca mulatta ENSMMUG00000023416 I 0.754
IGF2BP2 Gasterosteus aculeatus ENSGACG00000005991 I 0.754
IGF2BP1 Pteropus vampyrus ENSPVAG00000001718 I 0.753
IGF2BP2 Takifugu rubripes ENSTRUG00000009908 I 0.741
IGF2BP2 Oryzias latipes ENSORLG00000016532 I 0.736
IGF2BP3 Choloepus hoffmanni ENSCHOG00000002341 I 0.735
LOC424865 Gallus gallus ENSGALG00000006523 I 0.734
IGF2BP2 Tetraodon nigroviridis ENSTNIG00000016472 I 0.732
ENSPPYG00000017730 Pongo pygmaeus ENSPPYG00000017730 I 0.730
IGF2BP1 Tarsius syrichta ENSTSYG00000003912 I 0.702