CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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IGF2BP3
(
Macaca mulatta
)
KH,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00076 (RRM_1)
IPR018111
IPR000504
ENSMMUG00000004839
T22235_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
IGF2BP3
M295_0.6
Homo sapiens
Sequence logo not available
CAUU
PAR-clip
Cook et al.(2011)
357_20371350
0.997
IGF2BP3
M163_0.6
Homo sapiens
AMAHWCA
RNAcompete
Ray et al.(2013)
RNCMPT00172
0.997
IGF2BP1
M296_0.6
Homo sapiens
AAGCACCCGUU
SELEX
Cook et al.(2011)
359_12507992
0.807
IGF2BP1
M293_0.6
Homo sapiens
Sequence logo not available
CAU
PAR-clip
Cook et al.(2011)
355_20371350
0.807
IGF2BP2
M294_0.6
Homo sapiens
Sequence logo not available
CAU
PAR-clip
Cook et al.(2011)
356_20371350
0.741
IGF2BP2
M032_0.6
Homo sapiens
VMAHWCA
RNAcompete
Ray et al.(2013)
RNCMPT00033
0.741
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMMUP00000006429
RRM
4
69
LYIGNLSDNAAPSDLESIFKDAKIPVSGPFLVKTGYAFVDCPDESWALKAIEALSGKIELHGKPIE
ENSMMUP00000006429
RRM
83
150
LQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLK
ENSMMUP00000006429
KH
197
260
PLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGTSAACKSI
ENSMMUP00000006429
KH
278
343
PLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKAEEEI
ENSMMUP00000006429
KH
407
470
TVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEAQFKAQGRI
ENSMMUP00000006429
KH
489
553
EAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEVVVPRDQTPDENDQVVVKITGHFYACQVAQRKI
ENSMMUP00000035153
KH
26
89
TVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEAQFKAQGRI
ENSMMUP00000035153
KH
108
172
EAHIRVPSFAAGRVIGKGGKTARVNELQNLSSAEVVVPRDQTPDENDQVVVKITGHFYACQARVA
ENSMMUP00000035154
RRM
4
69
LYIGNLSDNAAPSDLESIFKDAKIPVSGPFLVKTGYAFVDCPDESWALKAIEALSGKIELHGKPIE
ENSMMUP00000035154
RRM
83
150
LQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLK
ENSMMUP00000035154
KH
197
260
PLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGTSAACKSI
ENSMMUP00000035154
KH
278
343
PLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKAEEEI
ENSMMUP00000035154
KH
407
470
TVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPDAKVRMVIITGPPEAQFKAQGRI
ENSMMUP00000035154
KH
489
553
EAHIRVPSFAAGRVIGKGGKTARVNELQNLSSAEVVVPRDQTPDENDQVVVKITGHFYACQARVA
Links
Other
KH,RRM
family RBPs
Other
Macaca mulatta
RBPs
70 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XR_022832.1
Pan troglodytes
ENSPTRG00000018986
I
0.997
IGF2BP3
Callithrix jacchus
ENSCJAG00000001499
I
0.997
IGF2BP3
Homo sapiens
ENSG00000136231
D
0.997
IGF2BP3
Microcebus murinus
ENSMICG00000013683
I
0.985
IGF2BP3
Tursiops truncatus
ENSTTRG00000008921
I
0.985
Igf2bp3
Dipodomys ordii
ENSDORG00000014185
I
0.982
D3ZB84_RAT
Rattus norvegicus
ENSRNOG00000009052
I
0.977
Igf2bp3
Mus musculus
ENSMUSG00000029814
I
0.972
IF2B3_CHICK
Gallus gallus
ENSGALG00000010961
I
0.901
IGF2BP3
Taeniopygia guttata
ENSTGUG00000002773
I
0.901
IGF2BP3
Ornithorhynchus anatinus
ENSOANG00000014203
I
0.896
ENSPPYG00000017730
Pongo pygmaeus
ENSPPYG00000017730
I
0.893
IGF2BP3
Anolis carolinensis
ENSACAG00000013538
I
0.888
igf2bp3
Xenopus tropicalis
ENSXETG00000007396
I
0.880
AAH57700
Xenopus laevis
AAH57700
I
0.880
AAC18597
Xenopus laevis
AAC18597
I
0.880
AAB97457
Xenopus laevis
AAB97457
I
0.880
O57526
Xenopus laevis
O57526
I
0.880
IGF2BP3
Choloepus hoffmanni
ENSCHOG00000002341
I
0.878
AAI70479
Xenopus laevis
AAI70479
I
0.873
O73932
Xenopus laevis
O73932
I
0.873
AAI70477
Xenopus laevis
AAI70477
I
0.873
AAI70224
Xenopus laevis
AAI70224
I
0.873
AAI70196
Xenopus laevis
AAI70196
I
0.873
AAC41285
Xenopus laevis
AAC41285
I
0.873
AAC18598
Xenopus laevis
AAC18598
I
0.873
IGF2BP3
Monodelphis domestica
ENSMODG00000001014
I
0.856
igf2bp3
Danio rerio
ENSDARG00000010266
I
0.837
IGF2BP3
Oryzias latipes
ENSORLG00000004712
I
0.827
IGF2BP1
Anolis carolinensis
ENSACAG00000006199
I
0.824
IF2B1_CHICK
Gallus gallus
ENSGALG00000001293
I
0.817
IGF2BP1
Monodelphis domestica
ENSMODG00000012268
I
0.809
IGF2BP1
Microcebus murinus
ENSMICG00000013324
I
0.809
IGF2BP1
Pan troglodytes
ENSPTRG00000009368
I
0.809
IGF2BP1
Loxodonta africana
ENSLAFG00000002048
I
0.807
Ame_R004727
Ailuropoda melanoleuca
Ame_R004727
I
0.807
igf2bp1
Danio rerio
ENSDARG00000061478
I
0.807
IGF2BP1
Homo sapiens
ENSG00000159217
D
0.807
IGF2BP1
Equus caballus
ENSECAG00000009723
I
0.807
LOC100395821
Callithrix jacchus
ENSCJAG00000007258
I
0.807
IGF2BP1
Bos taurus
ENSBTAG00000011736
I
0.807
ENSPPYG00000008913
Pongo pygmaeus
ENSPPYG00000008913
I
0.807
Igf2bp1
Rattus norvegicus
ENSRNOG00000006122
I
0.804
IGF2BP3
Tetraodon nigroviridis
ENSTNIG00000017755
I
0.804
Igf2bp1
Mus musculus
ENSMUSG00000013415
I
0.804
IGF2BP1
Canis familiaris
ENSCAFG00000016907
I
0.802
IGF2BP1
Gasterosteus aculeatus
ENSGACG00000005318
I
0.802
IGF2BP1
Macaca mulatta
ENSMMUG00000011533
I
0.802
IGF2BP3
Takifugu rubripes
ENSTRUG00000006094
I
0.802
IGF2BP1
Oryctolagus cuniculus
ENSOCUG00000004411
I
0.799
IGF2BP1
Gorilla gorilla
ENSGGOG00000008872
I
0.794
IGF2BP1
Tursiops truncatus
ENSTTRG00000007197
I
0.784
IGF2BP1
Tetraodon nigroviridis
ENSTNIG00000013986
I
0.784
IGF2BP1
Takifugu rubripes
ENSTRUG00000001295
N
0.779
IGF2BP1
Cavia porcellus
ENSCPOG00000020174
I
0.766
IGF2BP1
Otolemur garnettii
ENSOGAG00000001270
I
0.766
igf2bp2a
Danio rerio
ENSDARG00000003421
I
0.751
IGF2BP2
Macaca mulatta
ENSMMUG00000023416
I
0.741
XR_025001.1
Pan troglodytes
ENSPTRG00000015705
I
0.741
IGF2BP2
Oryctolagus cuniculus
ENSOCUG00000005057
I
0.741
IGF2BP2
Homo sapiens
ENSG00000073792
D
0.741
Igf2bp2
Rattus norvegicus
ENSRNOG00000025946
I
0.739
Igf2bp2
Mus musculus
ENSMUSG00000033581
I
0.736
IGF2BP2
Gasterosteus aculeatus
ENSGACG00000005991
I
0.728
LOC424865
Gallus gallus
ENSGALG00000006523
I
0.726
Igf2bp1
Dipodomys ordii
ENSDORG00000014371
I
0.723
IGF2BP2
Takifugu rubripes
ENSTRUG00000009908
I
0.708
IGF2BP2
Oryzias latipes
ENSORLG00000016532
I
0.706
IGF2BP1
Pteropus vampyrus
ENSPVAG00000001718
I
0.705