IGF2BP1 (Tetraodon nigroviridis)
KH,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1)
PF00076 (RRM_1) 		IPR018111
IPR000504 		ENSTNIG00000013986 T22273_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
IGF2BP1
M296_0.6 		Homo sapiens AAGCACCCGUU SELEX
Cook et al.(2011)
359_12507992 		0.830
IGF2BP1
M293_0.6 		Homo sapiens Sequence logo not available CAU PAR-clip
Cook et al.(2011)
355_20371350 		0.830
IGF2BP3
M295_0.6 		Homo sapiens Sequence logo not available CAUU PAR-clip
Cook et al.(2011)
357_20371350 		0.781
IGF2BP3
M163_0.6 		Homo sapiens AMAHWCA RNAcompete
Ray et al.(2013)
RNCMPT00172 		0.781
IGF2BP2
M294_0.6 		Homo sapiens Sequence logo not available CAU PAR-clip
Cook et al.(2011)
356_20371350 		0.741
IGF2BP2
M032_0.6 		Homo sapiens VMAHWCA RNAcompete
Ray et al.(2013)
RNCMPT00033 		0.741
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000016993 RRM 4 69
ENSTNIP00000016993 RRM 83 150
ENSTNIP00000016993 KH 201 264
ENSTNIP00000016993 KH 282 347
ENSTNIP00000016993 KH 409 472
ENSTNIP00000016993 KH 491 555

Links

Other KH,RRM family RBPs
Other Tetraodon nigroviridis RBPs

69 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
IGF2BP1 Gasterosteus aculeatus ENSGACG00000005318 I 0.909
igf2bp1 Danio rerio ENSDARG00000061478 I 0.891
IGF2BP1 Anolis carolinensis ENSACAG00000006199 I 0.837
IF2B1_CHICK Gallus gallus ENSGALG00000001293 I 0.835
IGF2BP1 Pan troglodytes ENSPTRG00000009368 I 0.832
IGF2BP1 Bos taurus ENSBTAG00000011736 I 0.830
LOC100395821 Callithrix jacchus ENSCJAG00000007258 I 0.830
ENSPPYG00000008913 Pongo pygmaeus ENSPPYG00000008913 I 0.830
IGF2BP1 Loxodonta africana ENSLAFG00000002048 I 0.830
IGF2BP1 Equus caballus ENSECAG00000009723 I 0.830
IGF2BP1 Homo sapiens ENSG00000159217 D 0.830
Ame_R004727 Ailuropoda melanoleuca Ame_R004727 I 0.830
Igf2bp1 Mus musculus ENSMUSG00000013415 I 0.827
Igf2bp1 Rattus norvegicus ENSRNOG00000006122 I 0.827
IGF2BP1 Microcebus murinus ENSMICG00000013324 I 0.827
IGF2BP1 Canis familiaris ENSCAFG00000016907 I 0.825
IGF2BP1 Macaca mulatta ENSMMUG00000011533 I 0.824
IGF2BP1 Monodelphis domestica ENSMODG00000012268 I 0.824
IGF2BP1 Oryctolagus cuniculus ENSOCUG00000004411 I 0.822
IGF2BP3 Anolis carolinensis ENSACAG00000013538 I 0.819
igf2bp3 Xenopus tropicalis ENSXETG00000007396 I 0.819
O73932 Xenopus laevis O73932 I 0.817
AAC18598 Xenopus laevis AAC18598 I 0.817
AAB97457 Xenopus laevis AAB97457 I 0.817
AAH57700 Xenopus laevis AAH57700 I 0.817
AAC18597 Xenopus laevis AAC18597 I 0.817
AAC41285 Xenopus laevis AAC41285 I 0.817
AAI70479 Xenopus laevis AAI70479 I 0.817
O57526 Xenopus laevis O57526 I 0.817
AAI70224 Xenopus laevis AAI70224 I 0.817
AAI70477 Xenopus laevis AAI70477 I 0.817
AAI70196 Xenopus laevis AAI70196 I 0.817
IF2B3_CHICK Gallus gallus ENSGALG00000010961 I 0.812
IGF2BP3 Taeniopygia guttata ENSTGUG00000002773 I 0.812
IGF2BP1 Gorilla gorilla ENSGGOG00000008872 I 0.809
IGF2BP1 Tursiops truncatus ENSTTRG00000007197 I 0.805
IGF2BP3 Monodelphis domestica ENSMODG00000001014 I 0.792
IGF2BP3 Ornithorhynchus anatinus ENSOANG00000014203 I 0.790
IGF2BP1 Otolemur garnettii ENSOGAG00000001270 I 0.789
Igf2bp3 Dipodomys ordii ENSDORG00000014185 I 0.784
IGF2BP3 Macaca mulatta ENSMMUG00000004839 I 0.784
XR_022832.1 Pan troglodytes ENSPTRG00000018986 I 0.781
IGF2BP3 Homo sapiens ENSG00000136231 D 0.781
IGF2BP3 Callithrix jacchus ENSCJAG00000001499 I 0.781
IGF2BP3 Tursiops truncatus ENSTTRG00000008921 I 0.781
D3ZB84_RAT Rattus norvegicus ENSRNOG00000009052 I 0.779
IGF2BP1 Cavia porcellus ENSCPOG00000020174 I 0.779
Igf2bp3 Mus musculus ENSMUSG00000029814 I 0.776
IGF2BP3 Microcebus murinus ENSMICG00000013683 I 0.767
igf2bp3 Danio rerio ENSDARG00000010266 I 0.764
igf2bp2a Danio rerio ENSDARG00000003421 I 0.761
IGF2BP3 Oryzias latipes ENSORLG00000004712 I 0.761
IGF2BP3 Takifugu rubripes ENSTRUG00000006094 I 0.748
IGF2BP3 Tetraodon nigroviridis ENSTNIG00000017755 I 0.746
IGF2BP2 Oryctolagus cuniculus ENSOCUG00000005057 I 0.744
IGF2BP2 Gasterosteus aculeatus ENSGACG00000005991 I 0.744
IGF2BP2 Macaca mulatta ENSMMUG00000023416 I 0.741
Igf2bp2 Rattus norvegicus ENSRNOG00000025946 I 0.741
XR_025001.1 Pan troglodytes ENSPTRG00000015705 I 0.741
IGF2BP2 Homo sapiens ENSG00000073792 D 0.741
Igf2bp2 Mus musculus ENSMUSG00000033581 I 0.739
Igf2bp1 Dipodomys ordii ENSDORG00000014371 I 0.739
IGF2BP1 Pteropus vampyrus ENSPVAG00000001718 I 0.733
IGF2BP2 Takifugu rubripes ENSTRUG00000009908 I 0.726
LOC424865 Gallus gallus ENSGALG00000006523 I 0.721
IGF2BP2 Tetraodon nigroviridis ENSTNIG00000016472 I 0.719
IGF2BP2 Oryzias latipes ENSORLG00000016532 I 0.716
ENSPPYG00000017730 Pongo pygmaeus ENSPPYG00000017730 I 0.707
IGF2BP3 Choloepus hoffmanni ENSCHOG00000002341 I 0.707