CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Igf2bp2
(
Mus musculus
)
KH,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00076 (RRM_1)
IPR018111
IPR000504
ENSMUSG00000033581
T22243_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
IGF2BP2
M294_0.6
Homo sapiens
Sequence logo not available
CAU
PAR-clip
Cook et al.(2011)
356_20371350
0.972
IGF2BP2
M032_0.6
Homo sapiens
VMAHWCA
RNAcompete
Ray et al.(2013)
RNCMPT00033
0.972
IGF2BP1
M296_0.6
Homo sapiens
AAGCACCCGUU
SELEX
Cook et al.(2011)
359_12507992
0.749
IGF2BP1
M293_0.6
Homo sapiens
Sequence logo not available
CAU
PAR-clip
Cook et al.(2011)
355_20371350
0.749
IGF2BP3
M295_0.6
Homo sapiens
Sequence logo not available
CAUU
PAR-clip
Cook et al.(2011)
357_20371350
0.736
IGF2BP3
M163_0.6
Homo sapiens
AMAHWCA
RNAcompete
Ray et al.(2013)
RNCMPT00172
0.736
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000046407
RRM
22
89
IQIRNIPPHLQWEVLDGLLAEYGTVENVEQVNTDTETAVVNVTYMTREEAKLAIEKLSGHQFEDYSFK
ENSMUSP00000046407
KH
126
189
PLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEACRMI
ENSMUSP00000046407
KH
207
272
PLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVRGTIEACANAEIEI
ENSMUSP00000046407
KH
360
423
TVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI
ENSMUSP00000046407
KH
442
506
EAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQTAQRKI
ENSMUSP00000097629
RRM
5
70
LYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME
ENSMUSP00000097629
RRM
84
151
IQIRNIPPHLQWEVLDGLLAEYGTVENVEQVNTDTETAVVNVTYMTREEAKLAIEKLSGHQFEDYSFK
ENSMUSP00000097629
KH
188
251
PLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEACRMI
ENSMUSP00000097629
KH
269
334
PLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVRGTIEACANAEIEI
ENSMUSP00000097629
KH
422
485
TVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI
ENSMUSP00000097629
KH
504
568
EAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQTAQRKI
ENSMUSP00000111037
RRM
16
83
IQIRNIPPHLQWEVLDGLLAEYGTVENVEQVNTDTETAVVNVTYMTREEAKLAIEKLSGHQFEDYSFK
ENSMUSP00000111037
KH
120
183
PLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAEKPVTIHATPEGTSEACRMI
ENSMUSP00000111037
KH
201
266
PLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVRGTIEACANAEIEI
ENSMUSP00000111037
KH
354
417
TVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPEAQFKAQGRI
ENSMUSP00000111037
KH
436
500
EAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEVIVRIIGHFFASQTAQRKI
Links
Other
KH,RRM
family RBPs
Other
Mus musculus
RBPs
95 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Igf2bp2
Rattus norvegicus
ENSRNOG00000025946
I
0.990
LOC100059313
Equus caballus
ENSECAG00000020685
N
0.972
XR_025001.1
Pan troglodytes
ENSPTRG00000015705
I
0.972
IGF2BP2
Oryctolagus cuniculus
ENSOCUG00000005057
I
0.972
IGF2BP2
Homo sapiens
ENSG00000073792
D
0.972
IGF2BP2
Macaca mulatta
ENSMMUG00000023416
I
0.972
IGF2BP2
Canis familiaris
ENSCAFG00000013297
N
0.969
IGF2BP2
Loxodonta africana
ENSLAFG00000017156
N
0.969
IGF2BP2
Bos taurus
ENSBTAG00000007666
N
0.969
IGF2BP2
Gorilla gorilla
ENSGGOG00000015035
N
0.966
IGF2BP2
Callithrix jacchus
ENSCJAG00000014731
N
0.966
IGF2BP2
Cavia porcellus
ENSCPOG00000005471
N
0.960
IGF2BP2
Ornithorhynchus anatinus
ENSOANG00000004648
N
0.917
IGF2BP2
Taeniopygia guttata
ENSTGUG00000006719
N
0.902
IGF2BP2
Meleagris gallopavo
ENSMGAG00000002904
N
0.902
IGF2BP2
Pteropus vampyrus
ENSPVAG00000011494
I
0.896
IGF2BP2
Anolis carolinensis
ENSACAG00000007995
N
0.893
ENSGGOG00000024907
Gorilla gorilla
ENSGGOG00000024907
I
0.888
IGF2BP2
Tursiops truncatus
ENSTTRG00000008241
N
0.881
ENSPPYG00000014373
Pongo pygmaeus
ENSPPYG00000014373
N
0.869
IGF2BP2
Procavia capensis
ENSPCAG00000015093
N
0.859
igf2bp2a
Danio rerio
ENSDARG00000003421
I
0.858
IGF2BP2
Monodelphis domestica
ENSMODG00000002822
N
0.856
IGF2BP2
Felis catus
ENSFCAG00000005369
N
0.853
IGF2BP2
Gasterosteus aculeatus
ENSGACG00000005991
I
0.842
LOC424865
Gallus gallus
ENSGALG00000006523
I
0.837
IGF2BP2
Takifugu rubripes
ENSTRUG00000009908
I
0.819
IGF2BP2
Oryzias latipes
ENSORLG00000016532
I
0.812
IGF2BP2
Tetraodon nigroviridis
ENSTNIG00000016472
I
0.803
igf2bp3
Xenopus tropicalis
ENSXETG00000007396
I
0.784
IGF2BP3
Taeniopygia guttata
ENSTGUG00000002773
I
0.779
IF2B3_CHICK
Gallus gallus
ENSGALG00000010961
I
0.779
AAI70477
Xenopus laevis
AAI70477
I
0.777
AAI70479
Xenopus laevis
AAI70479
I
0.777
O57526
Xenopus laevis
O57526
I
0.777
AAI70224
Xenopus laevis
AAI70224
I
0.777
O73932
Xenopus laevis
O73932
I
0.777
AAC18597
Xenopus laevis
AAC18597
I
0.777
AAB97457
Xenopus laevis
AAB97457
I
0.777
AAI70196
Xenopus laevis
AAI70196
I
0.777
AAC18598
Xenopus laevis
AAC18598
I
0.777
AAC41285
Xenopus laevis
AAC41285
I
0.777
AAH57700
Xenopus laevis
AAH57700
I
0.777
IGF2BP3
Anolis carolinensis
ENSACAG00000013538
I
0.774
IGF2BP3
Meleagris gallopavo
ENSMGAG00000010497
N
0.771
IGF2BP1
Anolis carolinensis
ENSACAG00000006199
I
0.769
IGF2BP3
Cavia porcellus
ENSCPOG00000015070
N
0.765
IGF2BP3
Vicugna pacos
ENSVPAG00000000613
N
0.765
IGF2BP3
Oryctolagus cuniculus
ENSOCUG00000008976
N
0.765
IGF2BP3
Monodelphis domestica
ENSMODG00000001014
I
0.765
IGF2BP2
Erinaceus europaeus
ENSEEUG00000009674
N
0.765
IF2B1_CHICK
Gallus gallus
ENSGALG00000001293
I
0.764
igf2bp1
Danio rerio
ENSDARG00000061478
I
0.756
IGF2BP3
Ornithorhynchus anatinus
ENSOANG00000014203
I
0.755
IGF2BP1
Monodelphis domestica
ENSMODG00000012268
I
0.751
IGF2BP1
Meleagris gallopavo
ENSMGAG00000002497
N
0.750
IGF2BP1
Homo sapiens
ENSG00000159217
D
0.749
IGF2BP1
Loxodonta africana
ENSLAFG00000002048
I
0.749
ENSPPYG00000008913
Pongo pygmaeus
ENSPPYG00000008913
I
0.749
IGF2BP1
Equus caballus
ENSECAG00000009723
I
0.749
IGF2BP1
Bos taurus
ENSBTAG00000011736
I
0.749
LOC100395821
Callithrix jacchus
ENSCJAG00000007258
I
0.749
Ame_R004727
Ailuropoda melanoleuca
Ame_R004727
I
0.749
IGF2BP3
Myotis lucifugus
ENSMLUG00000008451
N
0.748
IGF2BP1
Microcebus murinus
ENSMICG00000013324
I
0.746
Igf2bp1
Rattus norvegicus
ENSRNOG00000006122
I
0.746
Igf2bp1
Mus musculus
ENSMUSG00000013415
I
0.746
IGF2BP1
Pan troglodytes
ENSPTRG00000009368
I
0.746
IGF2BP1
Canis familiaris
ENSCAFG00000016907
I
0.746
IGF2BP1
Gasterosteus aculeatus
ENSGACG00000005318
I
0.744
IGF2BP1
Macaca mulatta
ENSMMUG00000011533
I
0.744
D3ZB84_RAT
Rattus norvegicus
ENSRNOG00000009052
I
0.741
IGF2BP1
Oryctolagus cuniculus
ENSOCUG00000004411
I
0.741
IGF2BP3
Tursiops truncatus
ENSTTRG00000008921
I
0.741
IGF2BP1
Tetraodon nigroviridis
ENSTNIG00000013986
I
0.739
Igf2bp3
Mus musculus
ENSMUSG00000029814
I
0.739
igf2bp3
Danio rerio
ENSDARG00000010266
I
0.738
IGF2BP3
Macaca mulatta
ENSMMUG00000004839
I
0.736
IGF2BP3
Callithrix jacchus
ENSCJAG00000001499
I
0.736
IGF2BP3
Tetraodon nigroviridis
ENSTNIG00000017755
I
0.736
IGF2BP3
Oryzias latipes
ENSORLG00000004712
I
0.736
XR_022832.1
Pan troglodytes
ENSPTRG00000018986
I
0.736
Igf2bp3
Dipodomys ordii
ENSDORG00000014185
I
0.736
IGF2BP3
Homo sapiens
ENSG00000136231
D
0.736
IGF2BP3
Takifugu rubripes
ENSTRUG00000006094
I
0.734
IGF2BP1
Gorilla gorilla
ENSGGOG00000008872
I
0.731
IGF2BP3
Bos taurus
ENSBTAG00000019406
N
0.729
IGF2BP3
Loxodonta africana
ENSLAFG00000011924
N
0.729
IGF2BP1
Tursiops truncatus
ENSTTRG00000007197
I
0.728
IGF2BP3
Microcebus murinus
ENSMICG00000013683
I
0.722
IGF2BP1
Cavia porcellus
ENSCPOG00000020174
I
0.716
IGF2BP1
Otolemur garnettii
ENSOGAG00000001270
I
0.711
IGF2BP1
Ochotona princeps
ENSOPRG00000010207
N
0.710
LOC100067926
Equus caballus
ENSECAG00000016797
N
0.708