LOC424865 (Gallus gallus)
KH,RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1)
PF00076 (RRM_1) 		IPR018111
IPR000504 		ENSGALG00000006523 T22216_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
IGF2BP2
M294_0.6 		Homo sapiens Sequence logo not available CAU PAR-clip
Cook et al.(2011)
356_20371350 		0.845
IGF2BP2
M032_0.6 		Homo sapiens VMAHWCA RNAcompete
Ray et al.(2013)
RNCMPT00033 		0.845
IGF2BP1
M296_0.6 		Homo sapiens AAGCACCCGUU SELEX
Cook et al.(2011)
359_12507992 		0.728
IGF2BP1
M293_0.6 		Homo sapiens Sequence logo not available CAU PAR-clip
Cook et al.(2011)
355_20371350 		0.728
IGF2BP3
M295_0.6 		Homo sapiens Sequence logo not available CAUU PAR-clip
Cook et al.(2011)
357_20371350 		0.726
IGF2BP3
M163_0.6 		Homo sapiens AMAHWCA RNAcompete
Ray et al.(2013)
RNCMPT00172 		0.726
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000010527 RRM 7 43
ENSGALP00000010527 RRM 57 124
ENSGALP00000010527 KH 168 231
ENSGALP00000010527 KH 249 314
ENSGALP00000010527 KH 380 443
ENSGALP00000010527 KH 462 526
ENSGALP00000022589 RRM 7 43
ENSGALP00000022589 RRM 57 124
ENSGALP00000022589 KH 168 231
ENSGALP00000022589 KH 249 314
ENSGALP00000022589 KH 402 465
ENSGALP00000022589 KH 484 548

Links

Other KH,RRM family RBPs
Other Gallus gallus RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
IGF2BP2 Oryctolagus cuniculus ENSOCUG00000005057 I 0.847
IGF2BP2 Macaca mulatta ENSMMUG00000023416 I 0.847
XR_025001.1 Pan troglodytes ENSPTRG00000015705 I 0.845
IGF2BP2 Homo sapiens ENSG00000073792 D 0.845
igf2bp2a Danio rerio ENSDARG00000003421 I 0.842
Igf2bp2 Rattus norvegicus ENSRNOG00000025946 I 0.840
Igf2bp2 Mus musculus ENSMUSG00000033581 I 0.837
IGF2BP2 Gasterosteus aculeatus ENSGACG00000005991 I 0.830
IGF2BP2 Takifugu rubripes ENSTRUG00000009908 I 0.804
IGF2BP2 Oryzias latipes ENSORLG00000016532 I 0.791
IGF2BP1 Cavia porcellus ENSCPOG00000020174 I 0.789
IGF2BP2 Tetraodon nigroviridis ENSTNIG00000016472 I 0.785
igf2bp3 Xenopus tropicalis ENSXETG00000007396 I 0.782
ENSGGOG00000024907 Gorilla gorilla ENSGGOG00000024907 I 0.779
IGF2BP2 Pteropus vampyrus ENSPVAG00000011494 I 0.776
AAH57700 Xenopus laevis AAH57700 I 0.774
AAC41285 Xenopus laevis AAC41285 I 0.774
AAC18597 Xenopus laevis AAC18597 I 0.774
AAC18598 Xenopus laevis AAC18598 I 0.774
AAI70224 Xenopus laevis AAI70224 I 0.774
O73932 Xenopus laevis O73932 I 0.774
O57526 Xenopus laevis O57526 I 0.774
AAI70479 Xenopus laevis AAI70479 I 0.774
AAI70477 Xenopus laevis AAI70477 I 0.774
AAI70196 Xenopus laevis AAI70196 I 0.774
AAB97457 Xenopus laevis AAB97457 I 0.774
IF2B3_CHICK Gallus gallus ENSGALG00000010961 I 0.772
IGF2BP3 Taeniopygia guttata ENSTGUG00000002773 I 0.772
IGF2BP3 Anolis carolinensis ENSACAG00000013538 I 0.769
IGF2BP3 Monodelphis domestica ENSMODG00000001014 I 0.760
IGF2BP3 Ornithorhynchus anatinus ENSOANG00000014203 I 0.755
IGF2BP3 Oryzias latipes ENSORLG00000004712 I 0.746
IGF2BP1 Anolis carolinensis ENSACAG00000006199 I 0.746
IGF2BP3 Tetraodon nigroviridis ENSTNIG00000017755 I 0.744
IF2B1_CHICK Gallus gallus ENSGALG00000001293 I 0.741
IGF2BP1 Oryctolagus cuniculus ENSOCUG00000004411 I 0.741
igf2bp3 Danio rerio ENSDARG00000010266 I 0.740
IGF2BP3 Takifugu rubripes ENSTRUG00000006094 I 0.739
igf2bp1 Danio rerio ENSDARG00000061478 I 0.734
IGF2BP1 Monodelphis domestica ENSMODG00000012268 I 0.734
IGF2BP3 Tursiops truncatus ENSTTRG00000008921 I 0.731
IGF2BP1 Gorilla gorilla ENSGGOG00000008872 I 0.730
IGF2BP1 Gasterosteus aculeatus ENSGACG00000005318 I 0.729
IGF2BP1 Bos taurus ENSBTAG00000011736 I 0.728
Ame_R004727 Ailuropoda melanoleuca Ame_R004727 I 0.728
LOC100395821 Callithrix jacchus ENSCJAG00000007258 I 0.728
IGF2BP1 Homo sapiens ENSG00000159217 D 0.728
Igf2bp3 Dipodomys ordii ENSDORG00000014185 I 0.728
IGF2BP1 Loxodonta africana ENSLAFG00000002048 I 0.728
IGF2BP1 Equus caballus ENSECAG00000009723 I 0.728
ENSPPYG00000008913 Pongo pygmaeus ENSPPYG00000008913 I 0.728
Igf2bp1 Rattus norvegicus ENSRNOG00000006122 I 0.726
XR_022832.1 Pan troglodytes ENSPTRG00000018986 I 0.726
Igf2bp1 Mus musculus ENSMUSG00000013415 I 0.726
IGF2BP1 Canis familiaris ENSCAFG00000016907 I 0.726
IGF2BP1 Microcebus murinus ENSMICG00000013324 I 0.726
IGF2BP1 Pan troglodytes ENSPTRG00000009368 I 0.726
IGF2BP3 Homo sapiens ENSG00000136231 D 0.726
IGF2BP3 Macaca mulatta ENSMMUG00000004839 I 0.726
IGF2BP3 Callithrix jacchus ENSCJAG00000001499 I 0.726
D3ZB84_RAT Rattus norvegicus ENSRNOG00000009052 I 0.723
Igf2bp3 Mus musculus ENSMUSG00000029814 I 0.723
IGF2BP1 Macaca mulatta ENSMMUG00000011533 I 0.723
IGF2BP1 Tetraodon nigroviridis ENSTNIG00000013986 I 0.721
IGF2BP3 Microcebus murinus ENSMICG00000013683 I 0.712
IGF2BP1 Tursiops truncatus ENSTTRG00000007197 I 0.708