CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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IGF2BP1
(
Oryctolagus cuniculus
)
KH,RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
PF00076 (RRM_1)
IPR018111
IPR000504
ENSOCUG00000004411
T22247_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
IGF2BP1
M296_0.6
Homo sapiens
AAGCACCCGUU
SELEX
Cook et al.(2011)
359_12507992
0.982
IGF2BP1
M293_0.6
Homo sapiens
Sequence logo not available
CAU
PAR-clip
Cook et al.(2011)
355_20371350
0.982
IGF2BP3
M295_0.6
Homo sapiens
Sequence logo not available
CAUU
PAR-clip
Cook et al.(2011)
357_20371350
0.802
IGF2BP3
M163_0.6
Homo sapiens
AMAHWCA
RNAcompete
Ray et al.(2013)
RNCMPT00172
0.802
IGF2BP2
M294_0.6
Homo sapiens
Sequence logo not available
CAU
PAR-clip
Cook et al.(2011)
356_20371350
0.741
IGF2BP2
M032_0.6
Homo sapiens
VMAHWCA
RNAcompete
Ray et al.(2013)
RNCMPT00033
0.741
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000003814
RRM
1
62
NLNESVTPADLEKVFAEHKISYSGQFLVKSGYAFVDCPDEHWAMKAIETFSGKVELQGKRLE
ENSOCUP00000003814
RRM
76
143
IQIRNIPPQLRWEVLDSLLAQYGTVENCEQVNTESETAVVNVTYSNREQTRQAITKLNGHQLENHALK
ENSOCUP00000003814
KH
190
253
PLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAGAAEKAISIHSTPEGCSSACKMI
ENSOCUP00000003814
KH
271
336
PLKILAHNNFVGRLIGKEGRNLKKVEQDTETKITISSLQDLTLYNPERTITVKGAIENCCRAEQEI
ENSOCUP00000003814
KH
400
463
VVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRI
ENSOCUP00000003814
KH
482
546
ETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKI
Links
Other
KH,RRM
family RBPs
Other
Oryctolagus cuniculus
RBPs
70 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R004727
Ailuropoda melanoleuca
Ame_R004727
I
0.982
IGF2BP1
Bos taurus
ENSBTAG00000011736
I
0.982
ENSPPYG00000008913
Pongo pygmaeus
ENSPPYG00000008913
I
0.982
IGF2BP1
Homo sapiens
ENSG00000159217
D
0.982
LOC100395821
Callithrix jacchus
ENSCJAG00000007258
I
0.982
IGF2BP1
Equus caballus
ENSECAG00000009723
I
0.982
IGF2BP1
Loxodonta africana
ENSLAFG00000002048
I
0.982
Igf2bp1
Rattus norvegicus
ENSRNOG00000006122
I
0.980
IGF2BP1
Microcebus murinus
ENSMICG00000013324
I
0.980
Igf2bp1
Mus musculus
ENSMUSG00000013415
I
0.980
IGF2BP1
Pan troglodytes
ENSPTRG00000009368
I
0.980
IGF2BP1
Canis familiaris
ENSCAFG00000016907
I
0.977
IGF2BP1
Macaca mulatta
ENSMMUG00000011533
I
0.977
IGF2BP1
Monodelphis domestica
ENSMODG00000012268
I
0.969
IGF2BP1
Gorilla gorilla
ENSGGOG00000008872
I
0.969
IGF2BP1
Tursiops truncatus
ENSTTRG00000007197
I
0.949
IGF2BP1
Anolis carolinensis
ENSACAG00000006199
I
0.949
IF2B1_CHICK
Gallus gallus
ENSGALG00000001293
I
0.944
IGF2BP1
Cavia porcellus
ENSCPOG00000020174
I
0.920
IGF2BP1
Otolemur garnettii
ENSOGAG00000001270
I
0.913
Igf2bp1
Dipodomys ordii
ENSDORG00000014371
I
0.871
igf2bp1
Danio rerio
ENSDARG00000061478
I
0.855
IGF2BP1
Gasterosteus aculeatus
ENSGACG00000005318
I
0.850
IGF2BP1
Pteropus vampyrus
ENSPVAG00000001718
I
0.850
AAI70224
Xenopus laevis
AAI70224
I
0.830
AAI70477
Xenopus laevis
AAI70477
I
0.830
AAI70479
Xenopus laevis
AAI70479
I
0.830
AAI70196
Xenopus laevis
AAI70196
I
0.830
O73932
Xenopus laevis
O73932
I
0.830
AAC41285
Xenopus laevis
AAC41285
I
0.830
AAC18598
Xenopus laevis
AAC18598
I
0.830
IGF2BP3
Anolis carolinensis
ENSACAG00000013538
I
0.827
igf2bp3
Xenopus tropicalis
ENSXETG00000007396
I
0.827
IF2B3_CHICK
Gallus gallus
ENSGALG00000010961
I
0.824
AAH57700
Xenopus laevis
AAH57700
I
0.824
IGF2BP3
Taeniopygia guttata
ENSTGUG00000002773
I
0.824
AAB97457
Xenopus laevis
AAB97457
I
0.824
AAC18597
Xenopus laevis
AAC18597
I
0.824
O57526
Xenopus laevis
O57526
I
0.824
IGF2BP1
Tetraodon nigroviridis
ENSTNIG00000013986
I
0.822
IGF2BP3
Tursiops truncatus
ENSTTRG00000008921
I
0.807
IGF2BP3
Ornithorhynchus anatinus
ENSOANG00000014203
I
0.803
IGF2BP3
Monodelphis domestica
ENSMODG00000001014
I
0.803
XR_022832.1
Pan troglodytes
ENSPTRG00000018986
I
0.802
IGF2BP3
Homo sapiens
ENSG00000136231
D
0.802
IGF2BP3
Callithrix jacchus
ENSCJAG00000001499
I
0.802
D3ZB84_RAT
Rattus norvegicus
ENSRNOG00000009052
I
0.799
Igf2bp3
Dipodomys ordii
ENSDORG00000014185
I
0.799
IGF2BP3
Macaca mulatta
ENSMMUG00000004839
I
0.799
Igf2bp3
Mus musculus
ENSMUSG00000029814
I
0.796
IGF2BP1
Tarsius syrichta
ENSTSYG00000003912
I
0.789
IGF2BP3
Microcebus murinus
ENSMICG00000013683
I
0.782
igf2bp2a
Danio rerio
ENSDARG00000003421
I
0.772
IGF2BP3
Oryzias latipes
ENSORLG00000004712
I
0.771
igf2bp3
Danio rerio
ENSDARG00000010266
I
0.767
IGF2BP3
Takifugu rubripes
ENSTRUG00000006094
I
0.761
IGF2BP3
Tetraodon nigroviridis
ENSTNIG00000017755
I
0.753
IGF2BP2
Macaca mulatta
ENSMMUG00000023416
I
0.744
Igf2bp2
Rattus norvegicus
ENSRNOG00000025946
I
0.744
IGF2BP2
Oryctolagus cuniculus
ENSOCUG00000005057
I
0.744
Igf2bp2
Mus musculus
ENSMUSG00000033581
I
0.741
IGF2BP2
Homo sapiens
ENSG00000073792
D
0.741
XR_025001.1
Pan troglodytes
ENSPTRG00000015705
I
0.741
LOC424865
Gallus gallus
ENSGALG00000006523
I
0.741
IGF2BP2
Gasterosteus aculeatus
ENSGACG00000005991
I
0.739
IGF2BP3
Choloepus hoffmanni
ENSCHOG00000002341
I
0.730
ENSPPYG00000017730
Pongo pygmaeus
ENSPPYG00000017730
I
0.725
IGF2BP2
Oryzias latipes
ENSORLG00000016532
I
0.723
IGF2BP2
Takifugu rubripes
ENSTRUG00000009908
I
0.716
IGF2BP2
Tetraodon nigroviridis
ENSTNIG00000016472
I
0.714