B9GFZ7_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0001s37920 T45442_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s37920.1 RRM 21 89
POPTR_0001s37920.1 RRM 110 180

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29629.m001425 Ricinus communis 29629.m001425 N 0.936
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.936
GSVIVG00014729001 Vitis vinifera GSVIVG00014729001 N 0.929
cassava24310.valid.m1 Manihot esculenta cassava24310.valid.m1 N 0.907
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.893
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.886
ppa006963m Prunus persica ppa006963m N 0.879
PK22392.1 Cannabis sativa PK22392.1 N 0.879
MDP0000202850 Malus x domestica MDP0000202850 N 0.864
MDP0000191633 Malus x domestica MDP0000191633 N 0.857
MDP0000220851 Malus x domestica MDP0000220851 N 0.857
AT3G13224 Arabidopsis thaliana AT3G13224-TAIR-G N 0.850
XM_002882764.1 Arabidopsis lyrata fgenesh2_kg.3__1405__AT3G13224.1 N 0.836
Glyma13g11650.1 Glycine max Glyma13g11650.1 N 0.793
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.793
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.786
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.786
ppa007812m Prunus persica ppa007812m N 0.779
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.779
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.779
LjSGA_018192.1 Lotus japonicus LjSGA_018192.1 N 0.779
GSVIVG00030120001 Vitis vinifera GSVIVG00030120001 N 0.764
mgf019396m Mimulus guttatus mgf019396m N 0.764
PDK_20s1363571g001 Phoenix dactylifera PDK_20s1363571g001 N 0.757
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.750
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.750
ppa007179m Prunus persica ppa007179m N 0.743
MDP0000288646 Malus x domestica MDP0000288646 N 0.743
MDP0000908645 Malus x domestica MDP0000908645 N 0.743
29917.m002004 Ricinus communis 29917.m002004 N 0.736
PK13311.1 Cannabis sativa PK13311.1 N 0.736
GRMZM2G050218 Zea mays GRMZM2G050218 N 0.729
Cucsa.340040 Cucumis sativus Cucsa.340040 N 0.729
LOC_Os08g23120 Oryza sativa LOC_Os08g23120 N 0.723
BGIOSIBCE027406 Oryza indica BGIOSIBCE027406 N 0.723
SB03G027920 Sorghum bicolor Sb03g027920 N 0.723
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.721
Medtr3g106660 Medicago truncatula Medtr3g106660 N 0.721
MDP0000270712 Malus x domestica MDP0000270712 N 0.707
MDP0000303054 Malus x domestica MDP0000303054 N 0.707
mgf016066m Mimulus guttatus mgf016066m N 0.707
BRADI3G39090 Brachypodium distachyon BRADI3G39090 N 0.707
AT5G40490 Arabidopsis thaliana AT5G40490-TAIR-G N 0.700