cassava24310.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava24310.valid.m1 T49218_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava24310.valid.m1 RRM 21 89
cassava24310.valid.m1 RRM 109 179

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

42 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GSVIVG00014729001 Vitis vinifera GSVIVG00014729001 N 0.929
cassava7031.valid.m1 Manihot esculenta cassava7031.valid.m1 N 0.929
29629.m001425 Ricinus communis 29629.m001425 N 0.914
B9GFZ7_POPTR Populus trichocarpa POPTR_0001s37920 N 0.907
GSVIVG00012784001 Vitis vinifera GSVIVG00012784001 N 0.879
Cucsa.240780 Cucumis sativus Cucsa.240780 N 0.879
ppa006963m Prunus persica ppa006963m N 0.871
MDP0000202850 Malus x domestica MDP0000202850 N 0.857
PK22392.1 Cannabis sativa PK22392.1 N 0.857
AT3G13224 Arabidopsis thaliana AT3G13224-TAIR-G N 0.850
MDP0000220851 Malus x domestica MDP0000220851 N 0.850
MDP0000191633 Malus x domestica MDP0000191633 N 0.850
XM_002882764.1 Arabidopsis lyrata fgenesh2_kg.3__1405__AT3G13224.1 N 0.843
Glyma05g09040.1 Glycine max Glyma05g09040.1 N 0.793
Glyma19g10300.1 Glycine max Glyma19g10300.1 N 0.786
Glyma16g07660.1 Glycine max Glyma16g07660.1 N 0.786
chr2.LjT32G18.130.nc Lotus japonicus chr2.LjT32G18.130.nc N 0.786
LjSGA_018192.1 Lotus japonicus LjSGA_018192.1 N 0.786
mgf019396m Mimulus guttatus mgf019396m N 0.779
Glyma13g11650.1 Glycine max Glyma13g11650.1 N 0.779
Glyma19g00530.1 Glycine max Glyma19g00530.1 N 0.771
ppa007812m Prunus persica ppa007812m N 0.764
cassava897.valid.m1 Manihot esculenta cassava897.valid.m1 N 0.764
GSVIVG00030120001 Vitis vinifera GSVIVG00030120001 N 0.757
B9GI65_POPTR Populus trichocarpa POPTR_0001s35360 N 0.750
PDK_20s1363571g001 Phoenix dactylifera PDK_20s1363571g001 N 0.750
SB03G027920 Sorghum bicolor Sb03g027920 N 0.745
MDP0000908645 Malus x domestica MDP0000908645 N 0.743
MDP0000288646 Malus x domestica MDP0000288646 N 0.743
29917.m002004 Ricinus communis 29917.m002004 N 0.736
LOC_Os08g23120 Oryza sativa LOC_Os08g23120 N 0.730
BGIOSIBCE027406 Oryza indica BGIOSIBCE027406 N 0.730
GSVIVG00032402001 Vitis vinifera GSVIVG00032402001 N 0.729
Cucsa.340040 Cucumis sativus Cucsa.340040 N 0.721
GRMZM2G050218 Zea mays GRMZM2G050218 N 0.721
Medtr3g106660 Medicago truncatula Medtr3g106660 N 0.721
ppa007179m Prunus persica ppa007179m N 0.714
PDK_20s1371981g001 Phoenix dactylifera PDK_20s1371981g001 N 0.708
PK13311.1 Cannabis sativa PK13311.1 N 0.707
BRADI3G20700 Brachypodium distachyon BRADI3G20700 N 0.702
mgf016066m Mimulus guttatus mgf016066m N 0.700
AT5G40490 Arabidopsis thaliana AT5G40490-TAIR-G N 0.700