ENSCAFG00000018580 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000018580 T35182_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.789
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.789
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.789
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.782
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000027424 RRM 22 88
ENSCAFP00000027424 RRM 110 179

Links

Other RRM family RBPs
Other Canis familiaris RBPs

116 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.764
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.757
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.754
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.752
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.752
HNRNPA1 Homo sapiens ENSG00000135486 D 0.752
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.752
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.752
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.752
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.752
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.752
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.752
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.752
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.752
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.752
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.752
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.752
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.752
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.752
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.752
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.752
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.752
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.752
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.752
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.752
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.752
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.752
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.752
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.752
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.752
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.745
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.745
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.745
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.745
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.745
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.745
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.745
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.745
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.745
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.745
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.743
ENSCAFG00000023056 Canis familiaris ENSCAFG00000023056 I 0.741
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.741
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.739
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.738
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.738
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.738
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.738
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.738
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.738
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.738
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.738
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.738
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.736
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.733
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.732
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.732
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.732
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.731
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.731
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.731
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.731
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.731
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.731
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.731
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.731
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.729
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.729
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.729
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.729
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.725
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.724
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.724
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.724
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.724
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.724
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.724
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.724
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.724
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.722
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.722
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.721
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.721
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.720
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.718
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.718
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.718
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.717
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.717
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.717
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.717
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.717
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.717
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.715
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.715
LOC100054206 Equus caballus ENSECAG00000006699 I 0.715
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.714
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.713
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.712
ENSGGOG00000022797 Gorilla gorilla ENSGGOG00000022797 I 0.712
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.711
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.711
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.710
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.710
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.708
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.708
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.707
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.706
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.706
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.704
LOC785445 Bos taurus ENSBTAG00000025621 I 0.703
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.703
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.703
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.703
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.701
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.700