ENSCAFG00000023056 (Canis familiaris)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCAFG00000023056 T35207_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.785
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.785
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.785
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.771
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCAFP00000006663 RRM 22 85
ENSCAFP00000006663 RRM 105 173

Links

Other RRM family RBPs
Other Canis familiaris RBPs

172 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCAFG00000014691 Canis familiaris ENSCAFG00000014691 I 0.799
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.786
ENSCAFG00000006663 Canis familiaris ENSCAFG00000006663 I 0.780
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.779
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.779
HNRNPA1 Homo sapiens ENSG00000135486 D 0.779
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.779
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.779
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.779
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.779
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.779
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.779
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.779
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.779
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.779
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.779
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.779
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.779
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.779
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.779
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.779
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.779
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.779
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.779
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.779
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.779
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.779
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.779
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.779
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.779
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.779
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.779
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.779
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.779
ENSCAFG00000008379 Canis familiaris ENSCAFG00000008379 I 0.777
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.772
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.772
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.772
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.772
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.772
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.772
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.772
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.769
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.769
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.769
XM_844664.1 Canis familiaris ENSCAFG00000000687 I 0.768
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.768
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.766
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.766
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.766
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.766
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.766
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.766
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.766
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.764
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.759
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.759
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.759
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.759
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.759
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.759
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.759
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.759
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.759
ENSMMUG00000008337 Macaca mulatta ENSMMUG00000008337 I 0.757
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.757
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.757
ENSOGAG00000017179 Otolemur garnettii ENSOGAG00000017179 I 0.755
XR_011984.1 Macaca mulatta ENSMMUG00000011640 I 0.755
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.755
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.755
ENSMMUG00000022448 Macaca mulatta ENSMMUG00000022448 I 0.752
LOC785445 Bos taurus ENSBTAG00000025621 I 0.752
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.752
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.752
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.752
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.752
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.752
ENSPPYG00000003855 Pongo pygmaeus ENSPPYG00000003855 I 0.750
LOC100054206 Equus caballus ENSECAG00000006699 I 0.750
ENSCAFG00000017494 Canis familiaris ENSCAFG00000017494 I 0.750
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.750
ENSCAFG00000000746 Canis familiaris ENSCAFG00000000746 I 0.748
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.748
ENSCAFG00000003418 Canis familiaris ENSCAFG00000003418 I 0.746
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.745
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.745
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.745
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.745
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.745
ENSCAFG00000009412 Canis familiaris ENSCAFG00000009412 I 0.745
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.743
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.743
ENSCAFG00000024636 Canis familiaris ENSCAFG00000024636 I 0.743
ENSMMUG00000004528 Macaca mulatta ENSMMUG00000004528 I 0.743
ENSCAFG00000006036 Canis familiaris ENSCAFG00000006036 I 0.743
ENSCAFG00000003493 Canis familiaris ENSCAFG00000003493 I 0.741
ENSGGOG00000022797 Gorilla gorilla ENSGGOG00000022797 I 0.741
ENSCAFG00000018580 Canis familiaris ENSCAFG00000018580 I 0.741
ENSBTAG00000009937 Bos taurus ENSBTAG00000009937 I 0.741
ENSMODG00000006291 Monodelphis domestica ENSMODG00000006291 I 0.740
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.740
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.739
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.739
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.738
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.738
ENSCAFG00000024951 Canis familiaris ENSCAFG00000024951 I 0.738
ENSMMUG00000004182 Macaca mulatta ENSMMUG00000004182 I 0.738
ENSCAFG00000019097 Canis familiaris ENSCAFG00000019097 I 0.736
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.736
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.736
ENSCAFG00000024824 Canis familiaris ENSCAFG00000024824 I 0.732
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.731
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.731
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.731
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.731
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.731
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.731
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.731
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.731
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.731
ENSCAFG00000009606 Canis familiaris ENSCAFG00000009606 I 0.729
XR_010472.1 Macaca mulatta ENSMMUG00000012991 I 0.727
ENSCJAG00000015222 Callithrix jacchus ENSCJAG00000015222 I 0.727
ENSCAFG00000007918 Canis familiaris ENSCAFG00000007918 I 0.725
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.724
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.724
ENSBTAG00000012502 Bos taurus ENSBTAG00000012502 I 0.723
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.722
ENSCAFG00000013303 Canis familiaris ENSCAFG00000013303 I 0.721
ENSCJAG00000005326 Callithrix jacchus ENSCJAG00000005326 I 0.721
ENSCJAG00000005407 Callithrix jacchus ENSCJAG00000005407 I 0.718
ENSCAFG00000018456 Canis familiaris ENSCAFG00000018456 I 0.718
D4ABW2_RAT Rattus norvegicus ENSRNOG00000032168 I 0.718
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.717
ENSETEG00000001872 Echinops telfairi ENSETEG00000001872 I 0.717
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.717
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.717
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.717
AAH45260 Xenopus laevis AAH45260 I 0.717
ENSCAFG00000005307 Canis familiaris ENSCAFG00000005307 I 0.715
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.715
XM_543834.2 Canis familiaris ENSCAFG00000002157 I 0.715
ENSRNOG00000042093 Rattus norvegicus ENSRNOG00000042093 I 0.714
ENSG00000231942 Homo sapiens ENSG00000231942 I 0.714
ENSCJAG00000007634 Callithrix jacchus ENSCJAG00000007634 I 0.711
AAH72090 Xenopus laevis AAH72090 I 0.710
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.710
AAA49742 Xenopus laevis AAA49742 I 0.710
AAA49741 Xenopus laevis AAA49741 I 0.710
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.710
CBF67672 Xenopus laevis CBF67672 I 0.710
CBF67555 Xenopus laevis CBF67555 I 0.710
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.710
CBU92428 Xenopus laevis CBU92428 I 0.710
P17130 Xenopus laevis P17130 I 0.710
CBU92546 Xenopus laevis CBU92546 I 0.710
ENSCAFG00000024812 Canis familiaris ENSCAFG00000024812 I 0.709
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.708
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.708
ENSMMUG00000005750 Macaca mulatta ENSMMUG00000005750 I 0.707
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.703
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.703
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.703
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.703
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.703
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.703
ENSMODG00000002376 Monodelphis domestica ENSMODG00000002376 I 0.702
ENSCJAG00000001302 Callithrix jacchus ENSCJAG00000001302 I 0.701
ENSGGOG00000027762 Gorilla gorilla ENSGGOG00000027762 I 0.701
HNRNPA2B1 Taeniopygia guttata ENSTGUG00000002869 I 0.700
ENSGGOG00000024290 Gorilla gorilla ENSGGOG00000024290 I 0.700