CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.24.298.1
(
Selaginella moellendorfii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.24.298.1
T49886_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.24.298.1
RRM
8
76
LFIGGISWETTEEQLRDYFQRYGEIAETMIMKDRNTGRARGFGFVSFADPSAADMAVAEKHTINGRLVE
e_gw1.24.298.1
RRM
111
180
IFVGGLASTVTEEEFRGYFEQFGTISDAVVMYDHTTQRPRGFGFITFDSEDSVEAVLMKSFHELKDKMVE
Links
Other
RRM
family RBPs
Other
Selaginella moellendorfii
RBPs
34 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.734
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.727
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.727
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.727
mgf009385m
Mimulus guttatus
mgf009385m
N
0.727
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.727
estExt_Genewise1Plus.C_180065
Selaginella moellendorfii
estExt_Genewise1Plus.C_180065
N
0.727
Cucsa.180480
Cucumis sativus
Cucsa.180480
N
0.727
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.719
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.719
ppa005119m
Prunus persica
ppa005119m
N
0.719
30048.m000319
Ricinus communis
30048.m000319
N
0.719
ppa005132m
Prunus persica
ppa005132m
N
0.719
MDP0000642684
Malus x domestica
MDP0000642684
N
0.712
29608.m000212
Ricinus communis
29608.m000212
N
0.712
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.712
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.712
MDP0000320618
Malus x domestica
MDP0000320618
N
0.712
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.712
mgf009486m
Mimulus guttatus
mgf009486m
N
0.707
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.707
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.705
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.705
SB02G037690
Sorghum bicolor
Sb02g037690
N
0.705
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.705
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.705
BRADI1G23280
Brachypodium distachyon
BRADI1G23280
N
0.705
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.705
MDP0000907782
Malus x domestica
MDP0000907782
N
0.705
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.705
GRMZM2G022313
Zea mays
GRMZM2G022313
N
0.705
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.705
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.705
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.702