CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
30048.m000319
(
Ricinus communis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
30048.m000319
T48737_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
30048.m000319
RRM
8
76
LFIGGISWDTNEDRLREYFQVFGEVMEAVIMKDRATGRARGFGFVVFADPAVAERVVMEKHLIDGRNVE
30048.m000319
RRM
109
178
IFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLHKTFHELNGKMVE
Links
Other
RRM
family RBPs
Other
Ricinus communis
RBPs
76 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.957
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.957
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.950
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.950
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.942
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.935
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.928
PK13457.1
Cannabis sativa
PK13457.1
N
0.914
ppa005132m
Prunus persica
ppa005132m
N
0.906
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.906
ppa005119m
Prunus persica
ppa005119m
N
0.906
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.899
MDP0000320618
Malus x domestica
MDP0000320618
N
0.899
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.899
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.899
MDP0000204698
Malus x domestica
MDP0000204698
N
0.899
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.899
MDP0000609551
Malus x domestica
MDP0000609551
N
0.892
MDP0000188788
Malus x domestica
MDP0000188788
N
0.892
MDP0000907782
Malus x domestica
MDP0000907782
N
0.892
ppa004834m
Prunus persica
ppa004834m
N
0.892
29608.m000212
Ricinus communis
29608.m000212
N
0.892
PK25912.1
Cannabis sativa
PK25912.1
N
0.892
ppa005122m
Prunus persica
ppa005122m
N
0.892
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.886
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.885
MDP0000642684
Malus x domestica
MDP0000642684
N
0.885
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.885
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.879
mgf012147m
Mimulus guttatus
mgf012147m
N
0.878
mgf009385m
Mimulus guttatus
mgf009385m
N
0.878
Cucsa.180480
Cucumis sativus
Cucsa.180480
N
0.871
XM_002882506.1
Arabidopsis lyrata
fgenesh2_kg.3__820__AT3G07810.2
N
0.863
AT3G07810
Arabidopsis thaliana
AT3G07810-TAIR-G
N
0.863
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.863
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.863
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.863
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.863
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.858
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.856
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.856
27613.m000635
Ricinus communis
27613.m000635
N
0.856
chr6.LjT11E14.110.nc
Lotus japonicus
chr6.LjT11E14.110.nc
N
0.856
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.856
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.850
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.849
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.849
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.842
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.842
XM_002863283.1
Arabidopsis lyrata
Al_scaffold_0008_26
N
0.842
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.842
mgf004139m
Mimulus guttatus
mgf004139m
N
0.842
mgf009486m
Mimulus guttatus
mgf009486m
N
0.836
GRMZM2G013065
Zea mays
GRMZM2G013065
N
0.835
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.835
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.835
GRMZM2G144890
Zea mays
GRMZM2G144890
N
0.835
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.827
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.820
SB02G037690
Sorghum bicolor
Sb02g037690
N
0.820
LOC_Os07g39560
Oryza sativa
LOC_Os07g39560
N
0.820
BGIOSIBCE025402
Oryza indica
BGIOSIBCE025402
N
0.820
BRADI1G23280
Brachypodium distachyon
BRADI1G23280
N
0.813
Medtr4g155980
Medicago truncatula
Medtr4g155980
N
0.813
cassava10847.m1
Manihot esculenta
cassava10847.m1
N
0.813
GRMZM2G022313
Zea mays
GRMZM2G022313
N
0.806
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.806
AT4G26650
Arabidopsis thaliana
AT4G26650-TAIR-G
N
0.806
XM_002869554.1
Arabidopsis lyrata
fgenesh2_kg.7__1574__AT4G26650.1
N
0.806
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.799
CM1092.170.nc
Lotus japonicus
CM1092.170.nc
N
0.766
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.755
SB05G025410
Sorghum bicolor
Sb05g025410
N
0.741
PDK_20s1770661g001
Phoenix dactylifera
PDK_20s1770661g001
N
0.741
e_gw1.24.298.1
Selaginella moellendorfii
e_gw1.24.298.1
N
0.719
estExt_Genewise1Plus.C_180065
Selaginella moellendorfii
estExt_Genewise1Plus.C_180065
N
0.719