30048.m000319 (Ricinus communis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 30048.m000319 T48737_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
30048.m000319 RRM 8 76
30048.m000319 RRM 109 178

Links

Other RRM family RBPs
Other Ricinus communis RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.957
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.957
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.950
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.950
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.942
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.935
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.928
PK13457.1 Cannabis sativa PK13457.1 N 0.914
ppa005132m Prunus persica ppa005132m N 0.906
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.906
ppa005119m Prunus persica ppa005119m N 0.906
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.899
MDP0000320618 Malus x domestica MDP0000320618 N 0.899
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.899
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.899
MDP0000204698 Malus x domestica MDP0000204698 N 0.899
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.899
MDP0000609551 Malus x domestica MDP0000609551 N 0.892
MDP0000188788 Malus x domestica MDP0000188788 N 0.892
MDP0000907782 Malus x domestica MDP0000907782 N 0.892
ppa004834m Prunus persica ppa004834m N 0.892
29608.m000212 Ricinus communis 29608.m000212 N 0.892
PK25912.1 Cannabis sativa PK25912.1 N 0.892
ppa005122m Prunus persica ppa005122m N 0.892
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.886
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.885
MDP0000642684 Malus x domestica MDP0000642684 N 0.885
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.885
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.879
mgf012147m Mimulus guttatus mgf012147m N 0.878
mgf009385m Mimulus guttatus mgf009385m N 0.878
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.871
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.863
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.863
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.863
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.863
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.863
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.863
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.858
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.856
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.856
27613.m000635 Ricinus communis 27613.m000635 N 0.856
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.856
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.856
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.850
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.849
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.849
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.842
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.842
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.842
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.842
mgf004139m Mimulus guttatus mgf004139m N 0.842
mgf009486m Mimulus guttatus mgf009486m N 0.836
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.835
SB02G005620 Sorghum bicolor Sb02g005620 N 0.835
SB02G005670 Sorghum bicolor Sb02g005670 N 0.835
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.835
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.827
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.820
SB02G037690 Sorghum bicolor Sb02g037690 N 0.820
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.820
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.820
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.813
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.813
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.813
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.806
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.806
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.806
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.806
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.799
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.766
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.755
SB05G025410 Sorghum bicolor Sb05g025410 N 0.741
PDK_20s1770661g001 Phoenix dactylifera PDK_20s1770661g001 N 0.741
e_gw1.24.298.1 Selaginella moellendorfii e_gw1.24.298.1 N 0.719
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.719