B9GTG8_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0002s22120 T45473_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s22120.1 RRM 8 76
POPTR_0002s22120.1 RRM 109 178

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.921
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.914
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.914
MDP0000320618 Malus x domestica MDP0000320618 N 0.914
29608.m000212 Ricinus communis 29608.m000212 N 0.914
MDP0000907782 Malus x domestica MDP0000907782 N 0.906
ppa005119m Prunus persica ppa005119m N 0.906
MDP0000642684 Malus x domestica MDP0000642684 N 0.899
ppa005132m Prunus persica ppa005132m N 0.899
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.894
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.892
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.892
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.885
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.885
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.885
30048.m000319 Ricinus communis 30048.m000319 N 0.885
PK25912.1 Cannabis sativa PK25912.1 N 0.871
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.871
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.871
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.863
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.856
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.856
ppa004834m Prunus persica ppa004834m N 0.856
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.856
PK13457.1 Cannabis sativa PK13457.1 N 0.856
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.856
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.856
mgf009385m Mimulus guttatus mgf009385m N 0.856
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.856
ppa005122m Prunus persica ppa005122m N 0.856
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.850
MDP0000188788 Malus x domestica MDP0000188788 N 0.849
MDP0000609551 Malus x domestica MDP0000609551 N 0.849
MDP0000204698 Malus x domestica MDP0000204698 N 0.849
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.849
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.849
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.849
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.849
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.849
27613.m000635 Ricinus communis 27613.m000635 N 0.849
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.843
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.842
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.842
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.836
mgf012147m Mimulus guttatus mgf012147m N 0.835
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.835
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.827
mgf004139m Mimulus guttatus mgf004139m N 0.820
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.820
mgf009486m Mimulus guttatus mgf009486m N 0.814
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.813
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.806
SB02G005620 Sorghum bicolor Sb02g005620 N 0.806
SB02G005670 Sorghum bicolor Sb02g005670 N 0.806
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.806
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.799
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.799
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.799
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.799
SB02G037690 Sorghum bicolor Sb02g037690 N 0.799
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.791
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.791
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.791
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.791
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.791
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.791
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.791
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.791
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.777
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.770
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.770
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.752
e_gw1.24.298.1 Selaginella moellendorfii e_gw1.24.298.1 N 0.727
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.727
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.712
PDK_20s1770661g001 Phoenix dactylifera PDK_20s1770661g001 N 0.705
SB05G025410 Sorghum bicolor Sb05g025410 N 0.705