CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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cassava12077.valid.m1
(
Manihot esculenta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
cassava12077.valid.m1
T49095_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava12077.valid.m1
RRM
8
76
LFIGGISWDTNEDRLRQYFQTFGEVVEAVIMKDRATGRARGFGFVVFADPSVAERVVMEKHLIDGRNVE
cassava12077.valid.m1
RRM
109
178
IFVGGLASTVTETDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLHKTFHELNGKMVE
Links
Other
RRM
family RBPs
Other
Manihot esculenta
RBPs
76 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
1.000
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.986
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.957
30048.m000319
Ricinus communis
30048.m000319
N
0.957
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.935
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.928
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.914
PK13457.1
Cannabis sativa
PK13457.1
N
0.906
ppa005132m
Prunus persica
ppa005132m
N
0.892
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.892
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.892
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.892
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.892
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.885
29608.m000212
Ricinus communis
29608.m000212
N
0.885
ppa005119m
Prunus persica
ppa005119m
N
0.885
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.885
PK25912.1
Cannabis sativa
PK25912.1
N
0.885
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.878
MDP0000320618
Malus x domestica
MDP0000320618
N
0.878
mgf009385m
Mimulus guttatus
mgf009385m
N
0.878
MDP0000204698
Malus x domestica
MDP0000204698
N
0.878
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.871
MDP0000188788
Malus x domestica
MDP0000188788
N
0.871
MDP0000907782
Malus x domestica
MDP0000907782
N
0.871
ppa005122m
Prunus persica
ppa005122m
N
0.871
ppa004834m
Prunus persica
ppa004834m
N
0.871
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.871
MDP0000609551
Malus x domestica
MDP0000609551
N
0.871
mgf012147m
Mimulus guttatus
mgf012147m
N
0.871
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.864
MDP0000642684
Malus x domestica
MDP0000642684
N
0.863
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.863
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.856
Cucsa.180480
Cucumis sativus
Cucsa.180480
N
0.856
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.851
mgf009486m
Mimulus guttatus
mgf009486m
N
0.850
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.849
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.849
27613.m000635
Ricinus communis
27613.m000635
N
0.849
mgf004139m
Mimulus guttatus
mgf004139m
N
0.842
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.842
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.842
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.842
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.835
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.835
XM_002882506.1
Arabidopsis lyrata
fgenesh2_kg.3__820__AT3G07810.2
N
0.835
AT3G07810
Arabidopsis thaliana
AT3G07810-TAIR-G
N
0.835
XM_002863283.1
Arabidopsis lyrata
Al_scaffold_0008_26
N
0.835
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.835
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.827
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.827
chr6.LjT11E14.110.nc
Lotus japonicus
chr6.LjT11E14.110.nc
N
0.827
GRMZM2G013065
Zea mays
GRMZM2G013065
N
0.827
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.821
GRMZM2G144890
Zea mays
GRMZM2G144890
N
0.820
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.820
SB02G037690
Sorghum bicolor
Sb02g037690
N
0.813
LOC_Os07g39560
Oryza sativa
LOC_Os07g39560
N
0.813
BGIOSIBCE025402
Oryza indica
BGIOSIBCE025402
N
0.813
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.813
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.813
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.806
GRMZM2G022313
Zea mays
GRMZM2G022313
N
0.806
AT4G26650
Arabidopsis thaliana
AT4G26650-TAIR-G
N
0.806
XM_002869554.1
Arabidopsis lyrata
fgenesh2_kg.7__1574__AT4G26650.1
N
0.806
BRADI1G23280
Brachypodium distachyon
BRADI1G23280
N
0.806
cassava10847.m1
Manihot esculenta
cassava10847.m1
N
0.799
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.799
Medtr4g155980
Medicago truncatula
Medtr4g155980
N
0.791
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.755
CM1092.170.nc
Lotus japonicus
CM1092.170.nc
N
0.745
PDK_20s1770661g001
Phoenix dactylifera
PDK_20s1770661g001
N
0.741
SB05G025410
Sorghum bicolor
Sb05g025410
N
0.727
estExt_Genewise1Plus.C_180065
Selaginella moellendorfii
estExt_Genewise1Plus.C_180065
N
0.719
e_gw1.24.298.1
Selaginella moellendorfii
e_gw1.24.298.1
N
0.719