B9IAN1_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0014s15970 T45656_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0014s15970.1 RRM 8 76
POPTR_0014s15970.1 RRM 109 180

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.894
ppa005119m Prunus persica ppa005119m N 0.887
29608.m000212 Ricinus communis 29608.m000212 N 0.887
ppa005132m Prunus persica ppa005132m N 0.879
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.879
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.879
MDP0000320618 Malus x domestica MDP0000320618 N 0.879
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.872
MDP0000907782 Malus x domestica MDP0000907782 N 0.872
MDP0000642684 Malus x domestica MDP0000642684 N 0.865
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.858
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.858
ppa004834m Prunus persica ppa004834m N 0.858
ppa005122m Prunus persica ppa005122m N 0.858
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.858
30048.m000319 Ricinus communis 30048.m000319 N 0.858
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.851
27613.m000635 Ricinus communis 27613.m000635 N 0.851
MDP0000609551 Malus x domestica MDP0000609551 N 0.851
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.851
MDP0000188788 Malus x domestica MDP0000188788 N 0.851
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.851
MDP0000204698 Malus x domestica MDP0000204698 N 0.851
PK25912.1 Cannabis sativa PK25912.1 N 0.851
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.851
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.844
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.844
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.844
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.844
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.844
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.844
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.844
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.844
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.837
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.837
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.837
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.837
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.837
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.837
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.837
mgf012147m Mimulus guttatus mgf012147m N 0.830
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.830
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.830
PK13457.1 Cannabis sativa PK13457.1 N 0.823
mgf009486m Mimulus guttatus mgf009486m N 0.823
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.823
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.823
mgf009385m Mimulus guttatus mgf009385m N 0.816
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.816
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.816
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.816
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.809
mgf004139m Mimulus guttatus mgf004139m N 0.809
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.801
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.794
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.794
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.780
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.780
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.780
SB02G005670 Sorghum bicolor Sb02g005670 N 0.780
SB02G005620 Sorghum bicolor Sb02g005620 N 0.780
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.773
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.773
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.773
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.766
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.766
SB02G037690 Sorghum bicolor Sb02g037690 N 0.766
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.766
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.766
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.766
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.752
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.745
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.723
PDK_20s1770661g001 Phoenix dactylifera PDK_20s1770661g001 N 0.709
SB05G025410 Sorghum bicolor Sb05g025410 N 0.702
e_gw1.24.298.1 Selaginella moellendorfii e_gw1.24.298.1 N 0.702