ppa005132m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa005132m T58352_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa005132m RRM 8 76
ppa005132m RRM 108 177

Links

Other RRM family RBPs
Other Prunus persica RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa005119m Prunus persica ppa005119m N 0.993
MDP0000320618 Malus x domestica MDP0000320618 N 0.986
MDP0000907782 Malus x domestica MDP0000907782 N 0.978
MDP0000642684 Malus x domestica MDP0000642684 N 0.964
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.942
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.942
29608.m000212 Ricinus communis 29608.m000212 N 0.935
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.935
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.928
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.914
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.914
30048.m000319 Ricinus communis 30048.m000319 N 0.906
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.899
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.892
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.892
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.892
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.892
27613.m000635 Ricinus communis 27613.m000635 N 0.885
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.885
ppa004834m Prunus persica ppa004834m N 0.885
ppa005122m Prunus persica ppa005122m N 0.885
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.885
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.885
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.885
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.885
PK25912.1 Cannabis sativa PK25912.1 N 0.885
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.879
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.879
MDP0000609551 Malus x domestica MDP0000609551 N 0.878
MDP0000204698 Malus x domestica MDP0000204698 N 0.878
MDP0000188788 Malus x domestica MDP0000188788 N 0.878
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.878
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.871
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.871
PK13457.1 Cannabis sativa PK13457.1 N 0.871
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.871
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.863
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.863
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.863
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.857
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.856
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.856
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.856
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.856
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.849
mgf009486m Mimulus guttatus mgf009486m N 0.843
mgf012147m Mimulus guttatus mgf012147m N 0.842
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.842
mgf009385m Mimulus guttatus mgf009385m N 0.842
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.835
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.835
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.835
mgf004139m Mimulus guttatus mgf004139m N 0.827
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.813
SB02G005670 Sorghum bicolor Sb02g005670 N 0.813
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.813
SB02G005620 Sorghum bicolor Sb02g005620 N 0.813
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.806
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.806
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.806
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.806
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.806
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.799
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.799
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.799
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.799
SB02G037690 Sorghum bicolor Sb02g037690 N 0.799
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.791
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.784
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.784
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.777
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.766
PDK_20s1770661g001 Phoenix dactylifera PDK_20s1770661g001 N 0.741
SB05G025410 Sorghum bicolor Sb05g025410 N 0.741
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.741
e_gw1.24.298.1 Selaginella moellendorfii e_gw1.24.298.1 N 0.719
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.712
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.705