CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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B9HCV4_POPTR
(
Populus trichocarpa
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
POPTR_0006s01680
T45525_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0006s01680.1
RRM
8
76
LFIGGISWDTNEDRLKEYFRAFGEVLEAVIMKDRATGRARGFGFVVFADPAVAERVVMEKHLIDGRNVE
POPTR_0006s01680.1
RRM
108
177
IFVGGLASTVTESDFRKYFDQFGVITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVE
Links
Other
RRM
family RBPs
Other
Populus trichocarpa
RBPs
78 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.971
30048.m000319
Ricinus communis
30048.m000319
N
0.950
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.928
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.928
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.928
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.914
MDP0000204698
Malus x domestica
MDP0000204698
N
0.906
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.906
PK25912.1
Cannabis sativa
PK25912.1
N
0.899
ppa004834m
Prunus persica
ppa004834m
N
0.899
MDP0000609551
Malus x domestica
MDP0000609551
N
0.899
ppa005122m
Prunus persica
ppa005122m
N
0.899
MDP0000188788
Malus x domestica
MDP0000188788
N
0.899
ppa005132m
Prunus persica
ppa005132m
N
0.892
ppa005119m
Prunus persica
ppa005119m
N
0.892
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.892
PK13457.1
Cannabis sativa
PK13457.1
N
0.892
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.892
29608.m000212
Ricinus communis
29608.m000212
N
0.892
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.885
MDP0000320618
Malus x domestica
MDP0000320618
N
0.885
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.878
MDP0000907782
Malus x domestica
MDP0000907782
N
0.878
mgf012147m
Mimulus guttatus
mgf012147m
N
0.878
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.878
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.871
mgf009385m
Mimulus guttatus
mgf009385m
N
0.871
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.871
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.871
MDP0000642684
Malus x domestica
MDP0000642684
N
0.871
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.871
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.864
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.863
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.863
27613.m000635
Ricinus communis
27613.m000635
N
0.863
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.856
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.856
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.856
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.851
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.850
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.849
AT3G07810
Arabidopsis thaliana
AT3G07810-TAIR-G
N
0.849
XM_002882506.1
Arabidopsis lyrata
fgenesh2_kg.3__820__AT3G07810.2
N
0.849
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.849
Cucsa.180480
Cucumis sativus
Cucsa.180480
N
0.849
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.849
chr6.LjT11E14.110.nc
Lotus japonicus
chr6.LjT11E14.110.nc
N
0.842
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.842
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.835
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.835
GRMZM2G144890
Zea mays
GRMZM2G144890
N
0.835
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.835
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.827
GRMZM2G013065
Zea mays
GRMZM2G013065
N
0.827
XM_002863283.1
Arabidopsis lyrata
Al_scaffold_0008_26
N
0.827
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.827
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.820
cassava10847.m1
Manihot esculenta
cassava10847.m1
N
0.820
LOC_Os07g39560
Oryza sativa
LOC_Os07g39560
N
0.820
SB02G037690
Sorghum bicolor
Sb02g037690
N
0.820
BGIOSIBCE025402
Oryza indica
BGIOSIBCE025402
N
0.820
mgf004139m
Mimulus guttatus
mgf004139m
N
0.820
mgf009486m
Mimulus guttatus
mgf009486m
N
0.807
BRADI1G23280
Brachypodium distachyon
BRADI1G23280
N
0.806
GRMZM2G022313
Zea mays
GRMZM2G022313
N
0.806
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.791
XM_002869554.1
Arabidopsis lyrata
fgenesh2_kg.7__1574__AT4G26650.1
N
0.791
AT4G26650
Arabidopsis thaliana
AT4G26650-TAIR-G
N
0.791
Medtr4g155980
Medicago truncatula
Medtr4g155980
N
0.791
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.784
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.763
CM1092.170.nc
Lotus japonicus
CM1092.170.nc
N
0.745
SB05G025410
Sorghum bicolor
Sb05g025410
N
0.741
PDK_20s1770661g001
Phoenix dactylifera
PDK_20s1770661g001
N
0.727
estExt_Genewise1Plus.C_180065
Selaginella moellendorfii
estExt_Genewise1Plus.C_180065
N
0.712
GSVIVG00027891001
Vitis vinifera
GSVIVG00027891001
N
0.705
e_gw1.24.298.1
Selaginella moellendorfii
e_gw1.24.298.1
N
0.705
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.705