B9HCV4_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0006s01680 T45525_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s01680.1 RRM 8 76
POPTR_0006s01680.1 RRM 108 177

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.971
30048.m000319 Ricinus communis 30048.m000319 N 0.950
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.928
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.928
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.928
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.914
MDP0000204698 Malus x domestica MDP0000204698 N 0.906
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.906
PK25912.1 Cannabis sativa PK25912.1 N 0.899
ppa004834m Prunus persica ppa004834m N 0.899
MDP0000609551 Malus x domestica MDP0000609551 N 0.899
ppa005122m Prunus persica ppa005122m N 0.899
MDP0000188788 Malus x domestica MDP0000188788 N 0.899
ppa005132m Prunus persica ppa005132m N 0.892
ppa005119m Prunus persica ppa005119m N 0.892
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.892
PK13457.1 Cannabis sativa PK13457.1 N 0.892
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.892
29608.m000212 Ricinus communis 29608.m000212 N 0.892
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.885
MDP0000320618 Malus x domestica MDP0000320618 N 0.885
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.878
MDP0000907782 Malus x domestica MDP0000907782 N 0.878
mgf012147m Mimulus guttatus mgf012147m N 0.878
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.878
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.871
mgf009385m Mimulus guttatus mgf009385m N 0.871
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.871
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.871
MDP0000642684 Malus x domestica MDP0000642684 N 0.871
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.871
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.864
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.863
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.863
27613.m000635 Ricinus communis 27613.m000635 N 0.863
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.856
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.856
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.856
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.851
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.850
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.849
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.849
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.849
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.849
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.849
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.849
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.842
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.842
SB02G005620 Sorghum bicolor Sb02g005620 N 0.835
SB02G005670 Sorghum bicolor Sb02g005670 N 0.835
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.835
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.835
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.827
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.827
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.827
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.827
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.820
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.820
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.820
SB02G037690 Sorghum bicolor Sb02g037690 N 0.820
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.820
mgf004139m Mimulus guttatus mgf004139m N 0.820
mgf009486m Mimulus guttatus mgf009486m N 0.807
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.806
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.806
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.791
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.791
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.791
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.791
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.784
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.763
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.745
SB05G025410 Sorghum bicolor Sb05g025410 N 0.741
PDK_20s1770661g001 Phoenix dactylifera PDK_20s1770661g001 N 0.727
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.712
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.705
e_gw1.24.298.1 Selaginella moellendorfii e_gw1.24.298.1 N 0.705
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.705