chr6.LjT16B20.40.nc (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr6.LjT16B20.40.nc T55915_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr6.LjT16B20.40.nc RRM 6 74
chr6.LjT16B20.40.nc RRM 108 177

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.957
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.892
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.892
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.885
30048.m000319 Ricinus communis 30048.m000319 N 0.885
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.871
PK13457.1 Cannabis sativa PK13457.1 N 0.871
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.863
ppa005132m Prunus persica ppa005132m N 0.863
ppa005119m Prunus persica ppa005119m N 0.863
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.863
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.863
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.863
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.856
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.856
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.856
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.856
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.856
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.856
mgf009385m Mimulus guttatus mgf009385m N 0.856
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.856
MDP0000907782 Malus x domestica MDP0000907782 N 0.856
MDP0000320618 Malus x domestica MDP0000320618 N 0.856
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.856
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.851
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.850
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.849
PK25912.1 Cannabis sativa PK25912.1 N 0.849
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.849
29608.m000212 Ricinus communis 29608.m000212 N 0.849
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.849
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.849
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.849
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.849
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.842
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.842
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.842
MDP0000609551 Malus x domestica MDP0000609551 N 0.842
MDP0000188788 Malus x domestica MDP0000188788 N 0.842
MDP0000204698 Malus x domestica MDP0000204698 N 0.842
MDP0000642684 Malus x domestica MDP0000642684 N 0.842
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.842
mgf009486m Mimulus guttatus mgf009486m N 0.836
mgf012147m Mimulus guttatus mgf012147m N 0.835
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.835
mgf004139m Mimulus guttatus mgf004139m N 0.835
ppa005122m Prunus persica ppa005122m N 0.835
ppa004834m Prunus persica ppa004834m N 0.835
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.827
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.827
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.820
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.814
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.814
27613.m000635 Ricinus communis 27613.m000635 N 0.813
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.813
SB02G005670 Sorghum bicolor Sb02g005670 N 0.784
SB02G005620 Sorghum bicolor Sb02g005620 N 0.784
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.777
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.777
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.777
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.777
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.777
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.770
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.770
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.763
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.755
SB02G037690 Sorghum bicolor Sb02g037690 N 0.755
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.755
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.748
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.748
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.741
e_gw1.24.298.1 Selaginella moellendorfii e_gw1.24.298.1 N 0.727
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.723
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.719
PDK_20s1770661g001 Phoenix dactylifera PDK_20s1770661g001 N 0.712
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.705