mgf009385m (Mimulus guttatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 mgf009385m T53667_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
mgf009385m RRM 8 76
mgf009385m RRM 112 181

Links

Other RRM family RBPs
Other Mimulus guttatus RBPs

77 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
mgf012147m Mimulus guttatus mgf012147m N 0.914
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.899
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.899
PK25912.1 Cannabis sativa PK25912.1 N 0.878
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.878
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.878
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.878
30048.m000319 Ricinus communis 30048.m000319 N 0.878
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.871
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.871
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.871
MDP0000204698 Malus x domestica MDP0000204698 N 0.871
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.871
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.863
27613.m000635 Ricinus communis 27613.m000635 N 0.863
ppa005122m Prunus persica ppa005122m N 0.863
ppa004834m Prunus persica ppa004834m N 0.863
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.863
MDP0000609551 Malus x domestica MDP0000609551 N 0.863
MDP0000188788 Malus x domestica MDP0000188788 N 0.863
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.863
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.863
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.857
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.856
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.856
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.856
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.856
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.856
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.856
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.856
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.849
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.849
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.849
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.849
PK13457.1 Cannabis sativa PK13457.1 N 0.849
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.843
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.843
ppa005119m Prunus persica ppa005119m N 0.842
ppa005132m Prunus persica ppa005132m N 0.842
29608.m000212 Ricinus communis 29608.m000212 N 0.835
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.835
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.835
MDP0000320618 Malus x domestica MDP0000320618 N 0.835
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.835
mgf009486m Mimulus guttatus mgf009486m N 0.829
MDP0000907782 Malus x domestica MDP0000907782 N 0.827
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.827
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.827
MDP0000642684 Malus x domestica MDP0000642684 N 0.820
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.820
mgf004139m Mimulus guttatus mgf004139m N 0.820
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.820
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.820
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.816
SB02G037690 Sorghum bicolor Sb02g037690 N 0.813
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.813
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.806
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.806
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.806
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.806
SB02G005670 Sorghum bicolor Sb02g005670 N 0.799
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.799
SB02G005620 Sorghum bicolor Sb02g005620 N 0.799
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.799
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.799
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.791
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.791
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.791
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.791
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.770
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.748
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.734
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.730
e_gw1.24.298.1 Selaginella moellendorfii e_gw1.24.298.1 N 0.727
PDK_20s1770661g001 Phoenix dactylifera PDK_20s1770661g001 N 0.727
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.712
SB05G025410 Sorghum bicolor Sb05g025410 N 0.705