cassava23136.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava23136.valid.m1 T49196_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava23136.valid.m1 RRM 8 76
cassava23136.valid.m1 RRM 109 178

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

76 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.986
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.986
30048.m000319 Ricinus communis 30048.m000319 N 0.942
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.942
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.921
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.914
PK13457.1 Cannabis sativa PK13457.1 N 0.899
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.899
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.885
ppa005132m Prunus persica ppa005132m N 0.885
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.885
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.885
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.885
29608.m000212 Ricinus communis 29608.m000212 N 0.878
ppa005119m Prunus persica ppa005119m N 0.878
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.878
MDP0000320618 Malus x domestica MDP0000320618 N 0.871
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.871
PK25912.1 Cannabis sativa PK25912.1 N 0.871
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.871
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.864
MDP0000609551 Malus x domestica MDP0000609551 N 0.863
MDP0000204698 Malus x domestica MDP0000204698 N 0.863
MDP0000188788 Malus x domestica MDP0000188788 N 0.863
MDP0000907782 Malus x domestica MDP0000907782 N 0.863
mgf009385m Mimulus guttatus mgf009385m N 0.863
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.857
ppa004834m Prunus persica ppa004834m N 0.856
mgf012147m Mimulus guttatus mgf012147m N 0.856
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.856
MDP0000642684 Malus x domestica MDP0000642684 N 0.856
ppa005122m Prunus persica ppa005122m N 0.856
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.849
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.849
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.844
mgf009486m Mimulus guttatus mgf009486m N 0.843
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.842
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.842
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.842
mgf004139m Mimulus guttatus mgf004139m N 0.835
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.835
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.835
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.835
27613.m000635 Ricinus communis 27613.m000635 N 0.835
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.835
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.827
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.827
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.827
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.827
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.827
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.820
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.814
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.813
SB02G005620 Sorghum bicolor Sb02g005620 N 0.813
SB02G005670 Sorghum bicolor Sb02g005670 N 0.813
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.806
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.806
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.806
SB02G037690 Sorghum bicolor Sb02g037690 N 0.799
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.799
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.799
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.799
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.791
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.791
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.791
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.791
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.791
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.784
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.784
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.784
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.741
PDK_20s1770661g001 Phoenix dactylifera PDK_20s1770661g001 N 0.741
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.738
SB05G025410 Sorghum bicolor Sb05g025410 N 0.719
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.719
e_gw1.24.298.1 Selaginella moellendorfii e_gw1.24.298.1 N 0.712