CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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cassava23136.valid.m1
(
Manihot esculenta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
cassava23136.valid.m1
T49196_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava23136.valid.m1
RRM
8
76
LFIGGISWDTNEDRLRQYFQTFGEVVEAVIMKDRATGRARGFGFVVFADPSVAERVVMEKHLIDGRNVE
cassava23136.valid.m1
RRM
109
178
IFVGGLASTVTETDFKKYFDHFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLQKTFHELNGKMVE
Links
Other
RRM
family RBPs
Other
Manihot esculenta
RBPs
76 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.986
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.986
30048.m000319
Ricinus communis
30048.m000319
N
0.942
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.942
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.921
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.914
PK13457.1
Cannabis sativa
PK13457.1
N
0.899
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.899
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.885
ppa005132m
Prunus persica
ppa005132m
N
0.885
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.885
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.885
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.885
29608.m000212
Ricinus communis
29608.m000212
N
0.878
ppa005119m
Prunus persica
ppa005119m
N
0.878
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.878
MDP0000320618
Malus x domestica
MDP0000320618
N
0.871
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.871
PK25912.1
Cannabis sativa
PK25912.1
N
0.871
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.871
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.864
MDP0000609551
Malus x domestica
MDP0000609551
N
0.863
MDP0000204698
Malus x domestica
MDP0000204698
N
0.863
MDP0000188788
Malus x domestica
MDP0000188788
N
0.863
MDP0000907782
Malus x domestica
MDP0000907782
N
0.863
mgf009385m
Mimulus guttatus
mgf009385m
N
0.863
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.857
ppa004834m
Prunus persica
ppa004834m
N
0.856
mgf012147m
Mimulus guttatus
mgf012147m
N
0.856
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.856
MDP0000642684
Malus x domestica
MDP0000642684
N
0.856
ppa005122m
Prunus persica
ppa005122m
N
0.856
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.849
Cucsa.180480
Cucumis sativus
Cucsa.180480
N
0.849
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.844
mgf009486m
Mimulus guttatus
mgf009486m
N
0.843
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.842
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.842
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.842
mgf004139m
Mimulus guttatus
mgf004139m
N
0.835
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.835
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.835
XM_002863283.1
Arabidopsis lyrata
Al_scaffold_0008_26
N
0.835
27613.m000635
Ricinus communis
27613.m000635
N
0.835
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.835
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.827
XM_002882506.1
Arabidopsis lyrata
fgenesh2_kg.3__820__AT3G07810.2
N
0.827
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.827
AT3G07810
Arabidopsis thaliana
AT3G07810-TAIR-G
N
0.827
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.827
chr6.LjT11E14.110.nc
Lotus japonicus
chr6.LjT11E14.110.nc
N
0.820
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.814
GRMZM2G013065
Zea mays
GRMZM2G013065
N
0.813
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.813
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.813
GRMZM2G144890
Zea mays
GRMZM2G144890
N
0.806
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.806
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.806
SB02G037690
Sorghum bicolor
Sb02g037690
N
0.799
BGIOSIBCE025402
Oryza indica
BGIOSIBCE025402
N
0.799
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.799
LOC_Os07g39560
Oryza sativa
LOC_Os07g39560
N
0.799
BRADI1G23280
Brachypodium distachyon
BRADI1G23280
N
0.791
XM_002869554.1
Arabidopsis lyrata
fgenesh2_kg.7__1574__AT4G26650.1
N
0.791
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.791
AT4G26650
Arabidopsis thaliana
AT4G26650-TAIR-G
N
0.791
GRMZM2G022313
Zea mays
GRMZM2G022313
N
0.791
cassava10847.m1
Manihot esculenta
cassava10847.m1
N
0.784
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.784
Medtr4g155980
Medicago truncatula
Medtr4g155980
N
0.784
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.741
PDK_20s1770661g001
Phoenix dactylifera
PDK_20s1770661g001
N
0.741
CM1092.170.nc
Lotus japonicus
CM1092.170.nc
N
0.738
SB05G025410
Sorghum bicolor
Sb05g025410
N
0.719
estExt_Genewise1Plus.C_180065
Selaginella moellendorfii
estExt_Genewise1Plus.C_180065
N
0.719
e_gw1.24.298.1
Selaginella moellendorfii
e_gw1.24.298.1
N
0.712