CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Cucsa.042370
(
Cucumis sativus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Cucsa.042370
T49521_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.042370.1
RRM
8
76
LFIGGISWDTDEERLREYFGHYGEVVEAVIMRDRTTGRARGFGFVVFADPGVAERVILDKHVIDGRTVE
Cucsa.042370.1
RRM
108
177
IFVGGLASTVTEADFQKYFDQFGTITDVVVMYDHSTQRPRGFGFITYDSEECVDRVLHKTFHELNGKMVE
Links
Other
RRM
family RBPs
Other
Cucumis sativus
RBPs
77 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PK25912.1
Cannabis sativa
PK25912.1
N
0.928
ppa004834m
Prunus persica
ppa004834m
N
0.906
ppa005122m
Prunus persica
ppa005122m
N
0.906
MDP0000204698
Malus x domestica
MDP0000204698
N
0.899
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.899
27613.m000635
Ricinus communis
27613.m000635
N
0.899
MDP0000188788
Malus x domestica
MDP0000188788
N
0.892
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.892
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.892
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.892
MDP0000609551
Malus x domestica
MDP0000609551
N
0.892
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.886
Glyma18g09090.1
Glycine max
Glyma18g09090.1
N
0.885
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.885
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.878
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.878
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.878
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.878
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.871
mgf012147m
Mimulus guttatus
mgf012147m
N
0.871
XM_002869554.1
Arabidopsis lyrata
fgenesh2_kg.7__1574__AT4G26650.1
N
0.863
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.863
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.863
29608.m000212
Ricinus communis
29608.m000212
N
0.863
30048.m000319
Ricinus communis
30048.m000319
N
0.863
AT4G26650
Arabidopsis thaliana
AT4G26650-TAIR-G
N
0.863
mgf009385m
Mimulus guttatus
mgf009385m
N
0.863
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.857
cassava10847.m1
Manihot esculenta
cassava10847.m1
N
0.856
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.856
ppa005119m
Prunus persica
ppa005119m
N
0.856
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.856
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.856
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.856
ppa005132m
Prunus persica
ppa005132m
N
0.856
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.856
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.850
Cucsa.180480
Cucumis sativus
Cucsa.180480
N
0.849
MDP0000320618
Malus x domestica
MDP0000320618
N
0.849
chr6.LjT11E14.110.nc
Lotus japonicus
chr6.LjT11E14.110.nc
N
0.849
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.849
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.849
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.842
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.842
MDP0000907782
Malus x domestica
MDP0000907782
N
0.842
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.837
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.835
MDP0000642684
Malus x domestica
MDP0000642684
N
0.835
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.827
PK13457.1
Cannabis sativa
PK13457.1
N
0.827
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.820
BRADI1G23280
Brachypodium distachyon
BRADI1G23280
N
0.820
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.820
mgf009486m
Mimulus guttatus
mgf009486m
N
0.814
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.813
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.813
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.813
AT3G07810
Arabidopsis thaliana
AT3G07810-TAIR-G
N
0.813
BGIOSIBCE025402
Oryza indica
BGIOSIBCE025402
N
0.813
XM_002882506.1
Arabidopsis lyrata
fgenesh2_kg.3__820__AT3G07810.2
N
0.813
GRMZM2G013065
Zea mays
GRMZM2G013065
N
0.813
mgf004139m
Mimulus guttatus
mgf004139m
N
0.813
GRMZM2G022313
Zea mays
GRMZM2G022313
N
0.813
SB02G037690
Sorghum bicolor
Sb02g037690
N
0.813
GRMZM2G144890
Zea mays
GRMZM2G144890
N
0.806
LOC_Os07g39560
Oryza sativa
LOC_Os07g39560
N
0.806
XM_002863283.1
Arabidopsis lyrata
Al_scaffold_0008_26
N
0.799
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.799
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.799
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.791
Medtr4g155980
Medicago truncatula
Medtr4g155980
N
0.763
CM1092.170.nc
Lotus japonicus
CM1092.170.nc
N
0.723
SB05G025410
Sorghum bicolor
Sb05g025410
N
0.719
estExt_Genewise1Plus.C_180065
Selaginella moellendorfii
estExt_Genewise1Plus.C_180065
N
0.719
e_gw1.24.298.1
Selaginella moellendorfii
e_gw1.24.298.1
N
0.705
PDK_20s1770661g001
Phoenix dactylifera
PDK_20s1770661g001
N
0.705
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.705