GSVIVG00037771001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00037771001 T44798_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00037771001 RRM 8 76
GSVIVT00037771001 RRM 108 177

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000204698 Malus x domestica MDP0000204698 N 0.950
ppa005122m Prunus persica ppa005122m N 0.942
MDP0000188788 Malus x domestica MDP0000188788 N 0.942
ppa004834m Prunus persica ppa004834m N 0.942
MDP0000609551 Malus x domestica MDP0000609551 N 0.942
PK25912.1 Cannabis sativa PK25912.1 N 0.928
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.921
27613.m000635 Ricinus communis 27613.m000635 N 0.914
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.906
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.899
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.899
mgf009385m Mimulus guttatus mgf009385m N 0.899
30048.m000319 Ricinus communis 30048.m000319 N 0.899
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.899
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.899
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.899
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.899
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.893
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.892
Glyma18g09090.1 Glycine max Glyma18g09090.1 N 0.892
ppa005132m Prunus persica ppa005132m N 0.885
mgf012147m Mimulus guttatus mgf012147m N 0.885
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.885
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.885
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.885
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.885
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.885
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.885
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.885
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.878
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.878
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.878
ppa005119m Prunus persica ppa005119m N 0.878
MDP0000320618 Malus x domestica MDP0000320618 N 0.871
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.871
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.871
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.871
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.864
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.863
MDP0000907782 Malus x domestica MDP0000907782 N 0.863
29608.m000212 Ricinus communis 29608.m000212 N 0.863
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.858
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.857
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.856
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.856
MDP0000642684 Malus x domestica MDP0000642684 N 0.856
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.849
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.849
PK13457.1 Cannabis sativa PK13457.1 N 0.849
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.849
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.842
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.842
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.827
SB02G005620 Sorghum bicolor Sb02g005620 N 0.820
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.820
SB02G005670 Sorghum bicolor Sb02g005670 N 0.820
mgf009486m Mimulus guttatus mgf009486m N 0.814
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.813
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.813
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.813
SB02G037690 Sorghum bicolor Sb02g037690 N 0.813
mgf004139m Mimulus guttatus mgf004139m N 0.813
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.806
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.806
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.806
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.799
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.799
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.799
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.791
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.791
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.777
SB05G025410 Sorghum bicolor Sb05g025410 N 0.748
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.745
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.727
PDK_20s1770661g001 Phoenix dactylifera PDK_20s1770661g001 N 0.727
B9GRF1_POPTR Populus trichocarpa POPTR_0002s26030 N 0.705
e_gw1.24.298.1 Selaginella moellendorfii e_gw1.24.298.1 N 0.705
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.705