Glyma06g48230.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma06g48230.1 T52690_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma06g48230.1 RRM 241 269
Glyma06g48230.1 RRM 271 316
Glyma06g48230.1 RRM 361 431
Glyma06g48230.1 RRM 492 559

Links

Other RRM family RBPs
Other Glycine max RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.972
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.953
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.907
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.888
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.888
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.869
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.869
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.869
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.869
MDP0000194332 Malus x domestica MDP0000194332 N 0.864
MDP0000306572 Malus x domestica MDP0000306572 N 0.860
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.855
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.855
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.855
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.855
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.855
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.850
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.841
mgf010551m Mimulus guttatus mgf010551m N 0.841
mgf004253m Mimulus guttatus mgf004253m N 0.841
mgf007385m Mimulus guttatus mgf007385m N 0.841
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.832
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.827
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.822
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.818
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.813
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.808
SB05G026740 Sorghum bicolor Sb05g026740 N 0.808
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.808
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.808
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.799
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.799
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.790
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.771
ppa006486m Prunus persica ppa006486m N 0.762
LOC_Os11g41820 Oryza sativa LOC_Os11g41820 N 0.757
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.743
MDP0000288579 Malus x domestica MDP0000288579 N 0.743
estExt_Genewise1.C_1000126 Selaginella moellendorfii estExt_Genewise1.C_1000126 N 0.738
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.738
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.734
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.730
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.724
chr6.LjT04E21.260.nc Lotus japonicus chr6.LjT04E21.260.nc N 0.701
gw1.42.85.1 Selaginella moellendorfii gw1.42.85.1 N 0.701