ppa006486m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa006486m T58373_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ppa006486m RRM 57 82
ppa006486m RRM 94 137
ppa006486m RRM 182 252
ppa006486m RRM 331 393

Links

Other RRM family RBPs
Other Prunus persica RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000288579 Malus x domestica MDP0000288579 N 0.907
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.856
mgf004253m Mimulus guttatus mgf004253m N 0.801
mgf007385m Mimulus guttatus mgf007385m N 0.801
estExt_Genewise1.C_1000126 Selaginella moellendorfii estExt_Genewise1.C_1000126 N 0.800
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.796
MDP0000306572 Malus x domestica MDP0000306572 N 0.796
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.791
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.791
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.791
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.791
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.791
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.791
MDP0000194332 Malus x domestica MDP0000194332 N 0.791
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.791
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.791
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.791
mgf010551m Mimulus guttatus mgf010551m N 0.786
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.782
chr6.LjT04E21.260.nc Lotus japonicus chr6.LjT04E21.260.nc N 0.777
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.774
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.774
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.772
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.772
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.772
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.772
mgf009246m Mimulus guttatus mgf009246m N 0.771
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.768
AT1G60900 Arabidopsis thaliana AT1G60900-TAIR-G N 0.767
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.764
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.762
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.762
SB05G026740 Sorghum bicolor Sb05g026740 N 0.757
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.756
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.756
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.748
gw1.42.85.1 Selaginella moellendorfii gw1.42.85.1 N 0.748
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.748
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.748
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.743
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.741
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.733
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.733
e_gw1.98.112.1 Physcomitrella patens e_gw1.98.112.1 N 0.728
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.727