AT1G60900 (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT1G60900-TAIR-G T32670_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
AT1G60900.1-P RRM 257 282
AT1G60900.1-P RRM 288 332
AT1G60900.1-P RRM 377 447
AT1G60900.1-P RRM 511 573

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002888074.1 Arabidopsis lyrata fgenesh2_kg.2__371__AT1G60900.1 N 0.995
cassava35938.valid.m1 Manihot esculenta cassava35938.valid.m1 N 0.893
cassava35937.valid.m1 Manihot esculenta cassava35937.valid.m1 N 0.893
B9MXR1_POPTR Populus trichocarpa POPTR_0005s12700 N 0.893
MDP0000194332 Malus x domestica MDP0000194332 N 0.888
B9HEU4_POPTR Populus trichocarpa POPTR_0007s12550 N 0.883
Cucsa.365600 Cucumis sativus Cucsa.365600 N 0.879
MDP0000306572 Malus x domestica MDP0000306572 N 0.879
GSVIVG00018993001 Vitis vinifera GSVIVG00018993001 N 0.873
cassava40783.m1 Manihot esculenta cassava40783.m1 N 0.869
cassava40785.m1 Manihot esculenta cassava40785.m1 N 0.869
cassava37462.valid.m1 Manihot esculenta cassava37462.valid.m1 N 0.869
cassava37461.valid.m1 Manihot esculenta cassava37461.valid.m1 N 0.869
cassava40784.m1 Manihot esculenta cassava40784.m1 N 0.869
Medtr3g013160 Medicago truncatula Medtr3g013160 N 0.865
XM_002866951.1 Arabidopsis lyrata fgenesh2_kg.7__398__AT4G36690.1 N 0.864
ATU2AF65A Arabidopsis thaliana AT4G36690-TAIR-G N 0.859
mgf004253m Mimulus guttatus mgf004253m N 0.859
mgf007385m Mimulus guttatus mgf007385m N 0.859
mgf010551m Mimulus guttatus mgf010551m N 0.854
Medtr4g032620 Medicago truncatula Medtr4g032620 N 0.844
Medtr4g032540 Medicago truncatula Medtr4g032540 N 0.844
BRADI4G12260 Brachypodium distachyon BRADI4G12260 N 0.844
chr3.CM0129.150.nc Lotus japonicus chr3.CM0129.150.nc N 0.840
BRADI4G09940 Brachypodium distachyon BRADI4G09940 N 0.839
LOC_Os11g45590 Oryza sativa LOC_Os11g45590 N 0.834
GRMZM2G093256 Zea mays GRMZM2G093256 N 0.834
BGIOSIBCE008762 Oryza indica BGIOSIBCE008762 N 0.829
Glyma06g48230.1 Glycine max Glyma06g48230.1 N 0.827
Glyma04g43500.1 Glycine max Glyma04g43500.1 N 0.825
GRMZM2G022763 Zea mays GRMZM2G022763 N 0.820
GRMZM2G057450 Zea mays GRMZM2G057450 N 0.820
SB05G026740 Sorghum bicolor Sb05g026740 N 0.815
LOC_Os11g41820 Oryza sativa LOC_Os11g41820 N 0.776
ppa006486m Prunus persica ppa006486m N 0.767
estExt_Genewise1.C_1000126 Selaginella moellendorfii estExt_Genewise1.C_1000126 N 0.761
B9H2X2_POPTR Populus trichocarpa POPTR_0004s04100 N 0.761
gw1.88.127.1 Physcomitrella patens gw1.88.127.1 N 0.752
MDP0000288579 Malus x domestica MDP0000288579 N 0.751
e_gw1.79.119.1 Physcomitrella patens e_gw1.79.119.1 N 0.748
e_gw1.58.41.1 Physcomitrella patens e_gw1.58.41.1 N 0.748
chr6.LjT04E21.260.nc Lotus japonicus chr6.LjT04E21.260.nc N 0.746
estExt_gwp_gw1.C_2700027 Physcomitrella patens estExt_gwp_gw1.C_2700027 N 0.744
mgf009246m Mimulus guttatus mgf009246m N 0.741
BRADI4G38060 Brachypodium distachyon BRADI4G38060 N 0.737
e_gw1.98.112.1 Physcomitrella patens e_gw1.98.112.1 N 0.728
gw1.42.85.1 Selaginella moellendorfii gw1.42.85.1 N 0.709