MDP0000138486 (Malus x domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 MDP0000138486 T57337_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
AT1G76460-TAIR-G
M239_0.6 		Arabidopsis thaliana DGWGUGD RNAcompete
Ray et al.(2013)
RNCMPT00284 		0.838
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
MDP0000138486 RRM 25 91

Links

Other RRM family RBPs
Other Malus x domestica RBPs

107 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009964m Prunus persica ppa009964m I 0.956
Medtr3g159840 Medicago truncatula Medtr3g159840 I 0.896
PK21213.1 Cannabis sativa PK21213.1 I 0.896
CU179634_3 Medicago truncatula CU179634_3 I 0.896
mgf017214m Mimulus guttatus mgf017214m I 0.882
Cucsa.005270 Cucumis sativus Cucsa.005270 I 0.868
XM_002889039.1 Arabidopsis lyrata fgenesh2_kg.2__1933__AT1G76460.1 I 0.868
Glyma06g01670.1 Glycine max Glyma06g01670.1 I 0.866
Glyma04g01590.1 Glycine max Glyma04g01590.1 I 0.866
B9GPN6_POPTR Populus trichocarpa POPTR_0002s00610 I 0.853
gw1.51.103.1 Physcomitrella patens gw1.51.103.1 I 0.853
GSVIVG00009045001 Vitis vinifera GSVIVG00009045001 I 0.853
cassava23406.valid.m1 Manihot esculenta cassava23406.valid.m1 I 0.841
cassava23405.valid.m1 Manihot esculenta cassava23405.valid.m1 I 0.841
cassava7423.valid.m1 Manihot esculenta cassava7423.valid.m1 I 0.838
Medtr5g073010 Medicago truncatula Medtr5g073010 I 0.838
AT1G76460-TAIR-G Arabidopsis thaliana AT1G76460-TAIR-G D 0.838
gw1.126.80.1 Physcomitrella patens gw1.126.80.1 I 0.838
B9H5W4_POPTR Populus trichocarpa POPTR_0005s27810 I 0.838
gw1.41.247.1 Selaginella moellendorfii gw1.41.247.1 I 0.824
Glyma16g02220.1 Glycine max Glyma16g02220.1 I 0.824
Glyma13g01740.1 Glycine max Glyma13g01740.1 I 0.824
cassava44391.m1 Manihot esculenta cassava44391.m1 I 0.824
Glyma07g05670.1 Glycine max Glyma07g05670.1 I 0.824
AT1G20880 Arabidopsis thaliana AT1G20880-TAIR-G I 0.821
PK15672.1 Cannabis sativa PK15672.1 I 0.812
cassava39454.m1 Manihot esculenta cassava39454.m1 I 0.809
LjSGA_018073.2 Lotus japonicus LjSGA_018073.2 I 0.809
30076.m004440 Ricinus communis 30076.m004440 I 0.809
ppa009716m Prunus persica ppa009716m I 0.809
A9PAJ1_POPTR Populus trichocarpa POPTR_0014s10090 I 0.809
Glyma14g35110.1 Glycine max Glyma14g35110.1 I 0.809
GSVIVG00013430001 Vitis vinifera GSVIVG00013430001 I 0.806
XM_002893090.1 Arabidopsis lyrata fgenesh2_kg.1__2278__AT1G20880.1 I 0.806
B9GRQ8_POPTR Populus trichocarpa POPTR_0002s17990 I 0.794
MDP0000488395 Malus x domestica MDP0000488395 I 0.794
MDP0000548950 Malus x domestica MDP0000548950 I 0.794
cassava39418.m1 Manihot esculenta cassava39418.m1 I 0.794
MDP0000134468 Malus x domestica MDP0000134468 I 0.794
MDP0000184420 Malus x domestica MDP0000184420 I 0.794
MDP0000744398 Malus x domestica MDP0000744398 I 0.794
chr1.CM0150.310.nc Lotus japonicus chr1.CM0150.310.nc I 0.791
B9GUX4_POPTR Populus trichocarpa POPTR_0002s09830 I 0.783
Cucsa.311530 Cucumis sativus Cucsa.311530 I 0.783
cassava32990.m1 Manihot esculenta cassava32990.m1 I 0.779
MDP0000233609 Malus x domestica MDP0000233609 I 0.779
Cucsa.348630 Cucumis sativus Cucsa.348630 I 0.779
ppa016222m Prunus persica ppa016222m I 0.779
GSVIVG00027434001 Vitis vinifera GSVIVG00027434001 I 0.779
PK14266.1 Cannabis sativa PK14266.1 I 0.779
BRADI3G53240 Brachypodium distachyon BRADI3G53240 I 0.776
Glyma04g40770.1 Glycine max Glyma04g40770.1 I 0.776
ppa019392m Prunus persica ppa019392m I 0.768
BRADI1G45540 Brachypodium distachyon BRADI1G45540 I 0.768
ppa018603m Prunus persica ppa018603m I 0.768
ppa018926m Prunus persica ppa018926m I 0.768
MDP0000857317 Malus x domestica MDP0000857317 I 0.768
MDP0000118777 Malus x domestica MDP0000118777 I 0.768
XM_002880217.1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_4002831 I 0.768
MDP0000284454 Malus x domestica MDP0000284454 I 0.765
GRMZM2G042195 Zea mays GRMZM2G042195 I 0.765
BGIOSIBCE008410 Oryza indica BGIOSIBCE008410 I 0.765
29908.m006046 Ricinus communis 29908.m006046 I 0.765
GRMZM2G123796 Zea mays GRMZM2G123796 I 0.765
LOC_Os02g48340 Oryza sativa LOC_Os02g48340 I 0.765
SB04G030020 Sorghum bicolor Sb04g030020 I 0.765
e_gw1.23.82.1 Selaginella moellendorfii e_gw1.23.82.1 I 0.761
Glyma06g14020.1 Glycine max Glyma06g14020.1 N 0.761
XM_002890498.1 Arabidopsis lyrata scaffold_102598.1 I 0.761
Glyma16g02120.1 Glycine max Glyma16g02120.1 I 0.754
Glyma07g05590.1 Glycine max Glyma07g05590.1 I 0.754
GRMZM2G073700 Zea mays GRMZM2G073700 I 0.754
AT2G46780 Arabidopsis thaliana AT2G46780-TAIR-G I 0.754
AT1G78260 Arabidopsis thaliana AT1G78260-TAIR-G N 0.754
AT1G22330 Arabidopsis thaliana AT1G22330-TAIR-G N 0.739
LOC_Os06g11730 Oryza sativa LOC_Os06g11730 I 0.739
Glyma06g10750.1 Glycine max Glyma06g10750.1 I 0.739
XM_002887685.1 Arabidopsis lyrata fgenesh2_kg.2__2123__AT1G78260.1 N 0.739
Glyma04g10900.1 Glycine max Glyma04g10900.1 I 0.739
LOC_Os03g14190 Oryza sativa LOC_Os03g14190 I 0.735
BRADI3G58710 Brachypodium distachyon BRADI3G58710 I 0.735
30170.m013735 Ricinus communis 30170.m013735 I 0.731
Medtr3g122940 Medicago truncatula Medtr3g122940 N 0.725
XM_002890463.1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001899 N 0.725
BGIOSIBCE004465 Oryza indica BGIOSIBCE004465 I 0.716
29983.m003293 Ricinus communis 29983.m003293 I 0.716
cassava6633.valid.m1 Manihot esculenta cassava6633.valid.m1 I 0.716
LjT28A08.70.nc Lotus japonicus LjT28A08.70.nc I 0.716
cassava6634.valid.m1 Manihot esculenta cassava6634.valid.m1 I 0.716
GRMZM2G019266 Zea mays GRMZM2G019266 I 0.716
GRMZM2G092493 Zea mays GRMZM2G092493 I 0.716
LOC_Os01g65550 Oryza sativa LOC_Os01g65550 I 0.716
SB03G041530 Sorghum bicolor Sb03g041530 I 0.716
LOC_Os02g51890 Oryza sativa LOC_Os02g51890 I 0.710
Cucsa.160090 Cucumis sativus Cucsa.160090 I 0.710
BGIOSIBCE008701 Oryza indica BGIOSIBCE008701 I 0.710
GRMZM2G303915 Zea mays GRMZM2G303915 I 0.706
LOC_Os03g17760 Oryza sativa LOC_Os03g17760 I 0.706
SB10G024450 Sorghum bicolor Sb10g024450 N 0.701
PDK_20s1420851g001 Phoenix dactylifera PDK_20s1420851g001 I 0.701
MDP0000271231 Malus x domestica MDP0000271231 N 0.701
mgf002440m Mimulus guttatus mgf002440m N 0.701
MDP0000181802 Malus x domestica MDP0000181802 N 0.701
Cucsa.237790 Cucumis sativus Cucsa.237790 N 0.701
BRADI2G56676 Brachypodium distachyon BRADI2G56676 I 0.701
GRMZM2G180639 Zea mays GRMZM2G180639 N 0.701
GRMZM2G005236 Zea mays GRMZM2G005236 I 0.701