Glyma18g09090.1 (Glycine max)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Glyma18g09090.1 T52909_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Glyma18g09090.1 RRM 8 76
Glyma18g09090.1 RRM 108 177

Links

Other RRM family RBPs
Other Glycine max RBPs

83 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma08g43740.1 Glycine max Glyma08g43740.1 N 0.971
Glyma02g46650.1 Glycine max Glyma02g46650.1 N 0.964
Glyma14g02020.1 Glycine max Glyma14g02020.1 N 0.957
Medtr3g076980 Medicago truncatula Medtr3g076980 N 0.950
chr2.LjT48A12.20.nd Lotus japonicus chr2.LjT48A12.20.nd N 0.943
chr2.LjT48A12.190.nd Lotus japonicus chr2.LjT48A12.190.nd N 0.928
PK25912.1 Cannabis sativa PK25912.1 N 0.928
chr6.LjT11E14.110.nc Lotus japonicus chr6.LjT11E14.110.nc N 0.921
ppa005122m Prunus persica ppa005122m N 0.914
ppa004834m Prunus persica ppa004834m N 0.914
MDP0000609551 Malus x domestica MDP0000609551 N 0.906
MDP0000188788 Malus x domestica MDP0000188788 N 0.906
MDP0000204698 Malus x domestica MDP0000204698 N 0.906
B9GJW8_POPTR Populus trichocarpa POPTR_0001s37230 N 0.892
GSVIVG00037771001 Vitis vinifera GSVIVG00037771001 N 0.892
cassava31392.valid.m1 Manihot esculenta cassava31392.valid.m1 N 0.892
AT4G26650 Arabidopsis thaliana AT4G26650-TAIR-G N 0.885
27613.m000635 Ricinus communis 27613.m000635 N 0.885
Cucsa.042370 Cucumis sativus Cucsa.042370 N 0.885
XM_002869554.1 Arabidopsis lyrata fgenesh2_kg.7__1574__AT4G26650.1 N 0.885
B9I165_POPTR Populus trichocarpa POPTR_0011s09050 N 0.871
chr6.LjT16B20.40.nc Lotus japonicus chr6.LjT16B20.40.nc N 0.871
GSVIVG00030040001 Vitis vinifera GSVIVG00030040001 N 0.863
AT5G55550 Arabidopsis thaliana AT5G55550-TAIR-G N 0.863
XM_002862650.1 Arabidopsis lyrata fgenesh2_kg.8__1457__AT5G55550.1 N 0.856
B9GTG8_POPTR Populus trichocarpa POPTR_0002s22120 N 0.856
ppa005132m Prunus persica ppa005132m N 0.856
B9HCV4_POPTR Populus trichocarpa POPTR_0006s01680 N 0.856
ppa005119m Prunus persica ppa005119m N 0.856
Medtr2g030270 Medicago truncatula Medtr2g030270 N 0.856
Glyma02g47690.1 Glycine max Glyma02g47690.1 N 0.856
30048.m000319 Ricinus communis 30048.m000319 N 0.856
MDP0000320618 Malus x domestica MDP0000320618 N 0.849
cassava12077.valid.m1 Manihot esculenta cassava12077.valid.m1 N 0.849
mgf009385m Mimulus guttatus mgf009385m N 0.849
Glyma14g00970.1 Glycine max Glyma14g00970.1 N 0.849
29608.m000212 Ricinus communis 29608.m000212 N 0.849
cassava12078.valid.m1 Manihot esculenta cassava12078.valid.m1 N 0.849
mgf012147m Mimulus guttatus mgf012147m N 0.849
cassava23136.valid.m1 Manihot esculenta cassava23136.valid.m1 N 0.842
POPTR_0016s01150 Populus trichocarpa POPTR_0016s01150 N 0.842
cassava10847.m1 Manihot esculenta cassava10847.m1 N 0.842
XM_002882506.1 Arabidopsis lyrata fgenesh2_kg.3__820__AT3G07810.2 N 0.842
Medtr5g105300 Medicago truncatula Medtr5g105300 N 0.842
MDP0000907782 Malus x domestica MDP0000907782 N 0.842
AT3G07810 Arabidopsis thaliana AT3G07810-TAIR-G N 0.842
B9IAN1_POPTR Populus trichocarpa POPTR_0014s15970 N 0.837
LOC_Os11g41890 Oryza sativa LOC_Os11g41890 N 0.836
BRADI4G12200 Brachypodium distachyon BRADI4G12200 N 0.836
MDP0000642684 Malus x domestica MDP0000642684 N 0.835
cassava865.valid.m1 Manihot esculenta cassava865.valid.m1 N 0.827
Cucsa.120420 Cucumis sativus Cucsa.120420 N 0.827
Cucsa.180480 Cucumis sativus Cucsa.180480 N 0.820
SB02G005620 Sorghum bicolor Sb02g005620 N 0.820
SB02G005670 Sorghum bicolor Sb02g005670 N 0.820
PK13457.1 Cannabis sativa PK13457.1 N 0.813
GRMZM2G013065 Zea mays GRMZM2G013065 N 0.806
mgf004139m Mimulus guttatus mgf004139m N 0.806
BRADI1G23280 Brachypodium distachyon BRADI1G23280 N 0.799
GRMZM2G162954 Zea mays GRMZM2G162954 N 0.799
mgf009486m Mimulus guttatus mgf009486m N 0.793
GRMZM2G144890 Zea mays GRMZM2G144890 N 0.791
SB02G037690 Sorghum bicolor Sb02g037690 N 0.791
BGIOSIBCE025402 Oryza indica BGIOSIBCE025402 N 0.791
LOC_Os07g39560 Oryza sativa LOC_Os07g39560 N 0.784
AT5G47620 Arabidopsis thaliana AT5G47620-TAIR-G N 0.784
GRMZM2G022313 Zea mays GRMZM2G022313 N 0.784
GRMZM2G014400 Zea mays GRMZM2G014400 N 0.777
gw1.3.93.1 Selaginella moellendorfii gw1.3.93.1 N 0.770
XM_002863283.1 Arabidopsis lyrata Al_scaffold_0008_26 N 0.770
Medtr4g155980 Medicago truncatula Medtr4g155980 N 0.748
GSVIVG00027891001 Vitis vinifera GSVIVG00027891001 N 0.727
Cucsa.037090 Cucumis sativus Cucsa.037090 N 0.727
Cucsa.383370 Cucumis sativus Cucsa.383370 N 0.719
GSVIVG00028394001 Vitis vinifera GSVIVG00028394001 N 0.719
SB05G025410 Sorghum bicolor Sb05g025410 N 0.719
CM1092.170.nc Lotus japonicus CM1092.170.nc N 0.716
cassava7388.valid.m1 Manihot esculenta cassava7388.valid.m1 N 0.712
ppa005979m Prunus persica ppa005979m N 0.705
B9GRF1_POPTR Populus trichocarpa POPTR_0002s26030 N 0.705
Sb01g019610 Sorghum bicolor Sb01g019610 N 0.705
MDP0000320861 Malus x domestica MDP0000320861 N 0.705
estExt_Genewise1Plus.C_180065 Selaginella moellendorfii estExt_Genewise1Plus.C_180065 N 0.705