CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma18g09090.1
(
Glycine max
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Glyma18g09090.1
T52909_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma18g09090.1
RRM
8
76
LFIGGISWDTDEERLKDYFGKYGEVIEAVIMRDRVTGRARGFGFVVFADPSVAERVIMDKHIIDGRTVE
Glyma18g09090.1
RRM
108
177
IFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVE
Links
Other
RRM
family RBPs
Other
Glycine max
RBPs
83 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma08g43740.1
Glycine max
Glyma08g43740.1
N
0.971
Glyma02g46650.1
Glycine max
Glyma02g46650.1
N
0.964
Glyma14g02020.1
Glycine max
Glyma14g02020.1
N
0.957
Medtr3g076980
Medicago truncatula
Medtr3g076980
N
0.950
chr2.LjT48A12.20.nd
Lotus japonicus
chr2.LjT48A12.20.nd
N
0.943
chr2.LjT48A12.190.nd
Lotus japonicus
chr2.LjT48A12.190.nd
N
0.928
PK25912.1
Cannabis sativa
PK25912.1
N
0.928
chr6.LjT11E14.110.nc
Lotus japonicus
chr6.LjT11E14.110.nc
N
0.921
ppa005122m
Prunus persica
ppa005122m
N
0.914
ppa004834m
Prunus persica
ppa004834m
N
0.914
MDP0000609551
Malus x domestica
MDP0000609551
N
0.906
MDP0000188788
Malus x domestica
MDP0000188788
N
0.906
MDP0000204698
Malus x domestica
MDP0000204698
N
0.906
B9GJW8_POPTR
Populus trichocarpa
POPTR_0001s37230
N
0.892
GSVIVG00037771001
Vitis vinifera
GSVIVG00037771001
N
0.892
cassava31392.valid.m1
Manihot esculenta
cassava31392.valid.m1
N
0.892
AT4G26650
Arabidopsis thaliana
AT4G26650-TAIR-G
N
0.885
27613.m000635
Ricinus communis
27613.m000635
N
0.885
Cucsa.042370
Cucumis sativus
Cucsa.042370
N
0.885
XM_002869554.1
Arabidopsis lyrata
fgenesh2_kg.7__1574__AT4G26650.1
N
0.885
B9I165_POPTR
Populus trichocarpa
POPTR_0011s09050
N
0.871
chr6.LjT16B20.40.nc
Lotus japonicus
chr6.LjT16B20.40.nc
N
0.871
GSVIVG00030040001
Vitis vinifera
GSVIVG00030040001
N
0.863
AT5G55550
Arabidopsis thaliana
AT5G55550-TAIR-G
N
0.863
XM_002862650.1
Arabidopsis lyrata
fgenesh2_kg.8__1457__AT5G55550.1
N
0.856
B9GTG8_POPTR
Populus trichocarpa
POPTR_0002s22120
N
0.856
ppa005132m
Prunus persica
ppa005132m
N
0.856
B9HCV4_POPTR
Populus trichocarpa
POPTR_0006s01680
N
0.856
ppa005119m
Prunus persica
ppa005119m
N
0.856
Medtr2g030270
Medicago truncatula
Medtr2g030270
N
0.856
Glyma02g47690.1
Glycine max
Glyma02g47690.1
N
0.856
30048.m000319
Ricinus communis
30048.m000319
N
0.856
MDP0000320618
Malus x domestica
MDP0000320618
N
0.849
cassava12077.valid.m1
Manihot esculenta
cassava12077.valid.m1
N
0.849
mgf009385m
Mimulus guttatus
mgf009385m
N
0.849
Glyma14g00970.1
Glycine max
Glyma14g00970.1
N
0.849
29608.m000212
Ricinus communis
29608.m000212
N
0.849
cassava12078.valid.m1
Manihot esculenta
cassava12078.valid.m1
N
0.849
mgf012147m
Mimulus guttatus
mgf012147m
N
0.849
cassava23136.valid.m1
Manihot esculenta
cassava23136.valid.m1
N
0.842
POPTR_0016s01150
Populus trichocarpa
POPTR_0016s01150
N
0.842
cassava10847.m1
Manihot esculenta
cassava10847.m1
N
0.842
XM_002882506.1
Arabidopsis lyrata
fgenesh2_kg.3__820__AT3G07810.2
N
0.842
Medtr5g105300
Medicago truncatula
Medtr5g105300
N
0.842
MDP0000907782
Malus x domestica
MDP0000907782
N
0.842
AT3G07810
Arabidopsis thaliana
AT3G07810-TAIR-G
N
0.842
B9IAN1_POPTR
Populus trichocarpa
POPTR_0014s15970
N
0.837
LOC_Os11g41890
Oryza sativa
LOC_Os11g41890
N
0.836
BRADI4G12200
Brachypodium distachyon
BRADI4G12200
N
0.836
MDP0000642684
Malus x domestica
MDP0000642684
N
0.835
cassava865.valid.m1
Manihot esculenta
cassava865.valid.m1
N
0.827
Cucsa.120420
Cucumis sativus
Cucsa.120420
N
0.827
Cucsa.180480
Cucumis sativus
Cucsa.180480
N
0.820
SB02G005620
Sorghum bicolor
Sb02g005620
N
0.820
SB02G005670
Sorghum bicolor
Sb02g005670
N
0.820
PK13457.1
Cannabis sativa
PK13457.1
N
0.813
GRMZM2G013065
Zea mays
GRMZM2G013065
N
0.806
mgf004139m
Mimulus guttatus
mgf004139m
N
0.806
BRADI1G23280
Brachypodium distachyon
BRADI1G23280
N
0.799
GRMZM2G162954
Zea mays
GRMZM2G162954
N
0.799
mgf009486m
Mimulus guttatus
mgf009486m
N
0.793
GRMZM2G144890
Zea mays
GRMZM2G144890
N
0.791
SB02G037690
Sorghum bicolor
Sb02g037690
N
0.791
BGIOSIBCE025402
Oryza indica
BGIOSIBCE025402
N
0.791
LOC_Os07g39560
Oryza sativa
LOC_Os07g39560
N
0.784
AT5G47620
Arabidopsis thaliana
AT5G47620-TAIR-G
N
0.784
GRMZM2G022313
Zea mays
GRMZM2G022313
N
0.784
GRMZM2G014400
Zea mays
GRMZM2G014400
N
0.777
gw1.3.93.1
Selaginella moellendorfii
gw1.3.93.1
N
0.770
XM_002863283.1
Arabidopsis lyrata
Al_scaffold_0008_26
N
0.770
Medtr4g155980
Medicago truncatula
Medtr4g155980
N
0.748
GSVIVG00027891001
Vitis vinifera
GSVIVG00027891001
N
0.727
Cucsa.037090
Cucumis sativus
Cucsa.037090
N
0.727
Cucsa.383370
Cucumis sativus
Cucsa.383370
N
0.719
GSVIVG00028394001
Vitis vinifera
GSVIVG00028394001
N
0.719
SB05G025410
Sorghum bicolor
Sb05g025410
N
0.719
CM1092.170.nc
Lotus japonicus
CM1092.170.nc
N
0.716
cassava7388.valid.m1
Manihot esculenta
cassava7388.valid.m1
N
0.712
ppa005979m
Prunus persica
ppa005979m
N
0.705
B9GRF1_POPTR
Populus trichocarpa
POPTR_0002s26030
N
0.705
Sb01g019610
Sorghum bicolor
Sb01g019610
N
0.705
MDP0000320861
Malus x domestica
MDP0000320861
N
0.705
estExt_Genewise1Plus.C_180065
Selaginella moellendorfii
estExt_Genewise1Plus.C_180065
N
0.705