sfpq (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSDARG00000011564 T078817_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
sfpq
M08383_2.00		 Danio rerio NGURGKKN JPLE
Sasse et al.(2025)
RM_Dan.rer_ENSDARG00000011564 		0.016

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.775
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.775
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.775
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.775
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
RBM28
M00069_2.00 		Homo sapiens GWGUAGD RNAcompete
Ray et al.(2013)
RNCMPT00049 		0.291
(10.70%)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.016
(88.03%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000020522 RRM 236 313
ENSDARP00000020522 RRM 310 391
ENSDARP00000126177 RRM 236 313
ENSDARP00000126177 RRM 310 391
ENSDARP00000126326 RRM 12 93

RNA contacting residues

Links

Other RRM family RBPs
Other Danio rerio RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.863
ENSONIG00000017737 Oreochromis niloticus ENSONIG00000017737 I 0.850
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.844
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.838
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.819
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.819
ENSGMOG00000011957 Gadus morhua ENSGMOG00000011957 I 0.812
sfpq Oryzias latipes ENSORLG00000007459 I 0.812
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.806
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.781
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.775
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.775
SFPQ Echinops telfairi ENSETEG00000001095 I 0.775
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.775
SFPQ Homo sapiens ENSG00000116560 D 0.775
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.775
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.775
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.775
Sfpq Mus musculus ENSMUSG00000028820 I 0.775
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.775
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.775
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.775
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.775
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.775
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.775
SFPQ Procavia capensis ENSPCAG00000006164 I 0.775
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.775
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.775
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.775
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.775
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.775
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.775
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.775
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.775
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.775
SFPQ Bos taurus ENSBTAG00000016328 I 0.775
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.775
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.775
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.775
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.775
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.769
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.769
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.762
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.762
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.762
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.762
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.762
Aan_R015520 Calypte anna Aan_R015520 I 0.762
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.762
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.762
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.762
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.762
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.762
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.762
Tal_R009770 Tyto alba Tal_R009770 I 0.762
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.762
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.762
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.750
SFPQ Gallus gallus ENSGALG00000002514 I 0.750
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.750
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.750
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.744
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.738
SFPQ Pteropus vampyrus ENSPVAG00000001865 I 0.725
ENSTSYG00000009311 Tarsius syrichta ENSTSYG00000009311 I 0.706
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.700