ENSPMAG00000005583 (Petromyzon marinus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSPMAG00000005583 T086015_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
ENSPMAG00000005583
M21551_2.00		 Petromyzon marinus NGURGKKU JPLE
Sasse et al.(2025)
RM_Pet.mar_ENSPMAG00000005583 		0.024

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.728
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.728
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.728
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.728
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.024
(89.10%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSPMAP00000006185 RRM 166 243
ENSPMAP00000006185 RRM 240 308

RNA contacting residues

Links

Other RRM family RBPs
Other Petromyzon marinus RBPs

116 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.782
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.769
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.765
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.762
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.762
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.748
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.748
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.748
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.748
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.741
Aan_R015520 Calypte anna Aan_R015520 I 0.741
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.741
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.741
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.741
Tal_R009770 Tyto alba Tal_R009770 I 0.741
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.741
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.741
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.738
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.735
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.735
Aan_R001274 Calypte anna Aan_R001274 I 0.735
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.735
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.735
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.735
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.735
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.735
Tal_R009732 Tyto alba Tal_R009732 I 0.735
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.735
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.735
SFPQ Gallus gallus ENSGALG00000002514 I 0.735
PSPC1 Gallus gallus ENSGALG00000017142 I 0.735
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.735
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.730
ENSXMAG00000016391 Xiphophorus maculatus ENSXMAG00000016391 I 0.730
ENSPFOG00000003127 Poecilia formosa ENSPFOG00000003127 I 0.730
sfpq Oryzias latipes ENSORLG00000007459 I 0.728
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.728
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.728
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.728
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.728
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.728
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.728
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.728
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.728
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.728
SFPQ Bos taurus ENSBTAG00000016328 I 0.728
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.728
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.728
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.728
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.728
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.728
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.728
SFPQ Echinops telfairi ENSETEG00000001095 I 0.728
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.728
SFPQ Homo sapiens ENSG00000116560 D 0.728
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.728
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.728
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.728
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.728
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.728
Sfpq Mus musculus ENSMUSG00000028820 I 0.728
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.728
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.728
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.728
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.728
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.728
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.728
SFPQ Procavia capensis ENSPCAG00000006164 I 0.728
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.727
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.721
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.721
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.721
pspc1 Danio rerio ENSDARG00000006621 I 0.721
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.721
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.718
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.714
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.707
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.707
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.707
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.707
PSPC1 Sorex araneus ENSSARG00000000888 I 0.707
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.707
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.707
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.707
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.707
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.707
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.707
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.707
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.707
PSPC1 Felis catus ENSFCAG00000027841 I 0.707
PSPC1 Homo sapiens ENSG00000121390 I 0.707
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.707
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.707
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.707
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.707
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.707
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.707
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.707
Pspc1 Mus musculus ENSMUSG00000021938 I 0.707
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.707
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.707
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.707
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.707
ENSONIG00000017737 Oreochromis niloticus ENSONIG00000017737 I 0.703
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.701
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.701
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.701
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.701
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.701
nono.L Xenopus laevis XB-GENE-1002501 I 0.701
PSPC1 Bos taurus ENSBTAG00000003934 I 0.701
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.701
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.701
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.701
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.701
sfpq Danio rerio ENSDARG00000011564 I 0.700