e_gw.346.37.1 (Nematostella vectensis)
CCCH ZF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00642 (zf-CCCH) IPR000571 e_gw.346.37.1 T04947_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ZFP36
M264_0.6 		Homo sapiens Sequence logo not available HCYUBY RIP-chip
Cook et al.(2011)
193_18367721.1 		0.741
ZFP36
M263_0.6 		Homo sapiens Sequence logo not available AAUAA RIP-chip
Cook et al.(2011)
193_18367721 		0.741
ZFP36
M350_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
951_12324455 		0.741
ZFP36
M269_0.6 		Homo sapiens UUAUUUAWW SELEX
Cook et al.(2011)
221_12324455 		0.741
ZFP36
M268_0.6 		Homo sapiens Sequence logo not available AUUUA RIP-chip
Cook et al.(2011)
194_18256032.1 		0.741
ZFP36
M267_0.6 		Homo sapiens Sequence logo not available UUAUUUAUU RIP-chip
Cook et al.(2011)
194_18256032 		0.741
ZFP36
M266_0.6 		Homo sapiens Sequence logo not available UUGUGS RIP-chip
Cook et al.(2011)
193_18367721.3 		0.741
ZFP36
M265_0.6 		Homo sapiens Sequence logo not available CUUGU RIP-chip
Cook et al.(2011)
193_18367721.2 		0.741
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw.346.37.1 CCCH ZF 4 30
e_gw.346.37.1 CCCH ZF 42 68

Links

Other CCCH ZF family RBPs
Other Nematostella vectensis RBPs

165 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
30169.m006300 Ricinus communis 30169.m006300 N 0.000
APUM6 Arabidopsis thaliana AT4G25880-TAIR-G N 0.000
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.000
BRADI3G40520 Brachypodium distachyon BRADI3G40520 N 0.000
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.000
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.000
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.000
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.000
Glyma13g00670.1 Glycine max Glyma13g00670.1 N 0.000
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.000
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.000
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.000
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.000
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.000
gw1.2.45.1 Selaginella moellendorfii gw1.2.45.1 N 0.000
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.000
MDP0000265231 Malus x domestica MDP0000265231 N 0.000
MDP0000277305 Malus x domestica MDP0000277305 N 0.000
MDP0000313902 Malus x domestica MDP0000313902 N 0.000
Medtr2g041730 Medicago truncatula Medtr2g041730 N 0.000
mgf002285m Mimulus guttatus mgf002285m N 0.000
mgf006786m Mimulus guttatus mgf006786m N 0.000
PK12245.1 Cannabis sativa PK12245.1 N 0.000
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.000
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.000
ppa000898m Prunus persica ppa000898m N 0.000
ppa016404m Prunus persica ppa016404m N 0.000
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.000
XM_002869600.1 Arabidopsis lyrata scaffold_701722.1 N 0.000