gw1.2.45.1 (Selaginella moellendorfii)
PUF

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00806 (PUF) IPR001313 gw1.2.45.1 T24907_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.2.45.1 PUF 19 53
gw1.2.45.1 PUF 55 88
gw1.2.45.1 PUF 91 125
gw1.2.45.1 PUF 127 161
gw1.2.45.1 PUF 163 195
gw1.2.45.1 PUF 200 234
gw1.2.45.1 PUF 236 270
gw1.2.45.1 PUF 283 312

Links

Other PUF family RBPs
Other Selaginella moellendorfii RBPs

100 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.2.1396.1 Selaginella moellendorfii e_gw1.2.1396.1 N 0.960
e_gw1.96.1.1 Physcomitrella patens e_gw1.96.1.1 N 0.858
estExt_Genewise1.C_960051 Physcomitrella patens estExt_Genewise1.C_960051 N 0.858
estExt_Genewise1.C_350182 Physcomitrella patens estExt_Genewise1.C_350182 N 0.853
e_gw1.7.1189.1 Selaginella moellendorfii e_gw1.7.1189.1 N 0.840
MDP0000319167 Malus x domestica MDP0000319167 N 0.799
GSVIVG00024918001 Vitis vinifera GSVIVG00024918001 N 0.797
LOC_Os01g62650 Oryza sativa LOC_Os01g62650 N 0.796
cassava19437.valid.m1 Manihot esculenta cassava19437.valid.m1 N 0.795
GSVIVG00016507001 Vitis vinifera GSVIVG00016507001 N 0.794
B9HTG3_POPTR Populus trichocarpa POPTR_0010s20870 N 0.793
ppa000627m Prunus persica ppa000627m N 0.791
cassava33553.m1 Manihot esculenta cassava33553.m1 N 0.790
ppa000731m Prunus persica ppa000731m N 0.790
PK21390.1 Cannabis sativa PK21390.1 N 0.789
mgf015734m Mimulus guttatus mgf015734m N 0.788
B9GJ97_POPTR Populus trichocarpa POPTR_0001s25020 N 0.788
cassava30948.valid.m1 Manihot esculenta cassava30948.valid.m1 N 0.787
cassava30949.valid.m1 Manihot esculenta cassava30949.valid.m1 N 0.787
30143.m001164 Ricinus communis 30143.m001164 N 0.786
ppa000626m Prunus persica ppa000626m N 0.786
cassava13144.valid.m1 Manihot esculenta cassava13144.valid.m1 N 0.785
B9HMK2_POPTR Populus trichocarpa POPTR_0008s05850 N 0.785
Glyma15g04060.1 Glycine max Glyma15g04060.1 N 0.784
Medtr2g117180 Medicago truncatula Medtr2g117180 N 0.784
Glyma11g14500.1 Glycine max Glyma11g14500.1 N 0.783
SB03G039600 Sorghum bicolor Sb03g039600 N 0.782
MDP0000314338 Malus x domestica MDP0000314338 N 0.782
cassava19436.valid.m1 Manihot esculenta cassava19436.valid.m1 N 0.782
Glyma12g06430.1 Glycine max Glyma12g06430.1 N 0.779
Glyma12g06450.1 Glycine max Glyma12g06450.1 N 0.779
Glyma11g14550.1 Glycine max Glyma11g14550.1 N 0.775
PK00601.1 Cannabis sativa PK00601.1 N 0.775
Glyma11g14530.1 Glycine max Glyma11g14530.1 N 0.775
Medtr4g084270 Medicago truncatula Medtr4g084270 N 0.775
PK01617.1 Cannabis sativa PK01617.1 N 0.773
29595.m000292 Ricinus communis 29595.m000292 N 0.772
MDP0000776183 Malus x domestica MDP0000776183 N 0.772
Cucsa.138830 Cucumis sativus Cucsa.138830 N 0.771
B9HPE1_POPTR Populus trichocarpa POPTR_0009s03980 N 0.770
LOC_Os05g01910 Oryza sativa LOC_Os05g01910 N 0.767
BGIOSIBCE017275 Oryza indica BGIOSIBCE017275 N 0.767
BRADI2G39240 Brachypodium distachyon BRADI2G39240 N 0.766
BRADI2G39410 Brachypodium distachyon BRADI2G39410 N 0.766
XM_002311043.1 Populus trichocarpa POPTR_0008s03630 N 0.761
LOC_Os01g74030 Oryza sativa LOC_Os01g74030 N 0.760
BGIOSIBCE005171 Oryza indica BGIOSIBCE005171 N 0.760
GRMZM2G042623 Zea mays GRMZM2G042623 N 0.759
SB09G001090 Sorghum bicolor Sb09g001090 N 0.759
Cucsa.165170 Cucumis sativus Cucsa.165170 N 0.757
Cucsa.308530 Cucumis sativus Cucsa.308530 N 0.757
cassava10774.m1 Manihot esculenta cassava10774.m1 N 0.757
GRMZM2G012964 Zea mays GRMZM2G012964 N 0.755
B9HUI2_POPTR Populus trichocarpa POPTR_0010s23250 N 0.754
mgf015234m Mimulus guttatus mgf015234m N 0.753
LOC_Os02g57390 Oryza sativa LOC_Os02g57390 N 0.750
GSVIVG00016236001 Vitis vinifera GSVIVG00016236001 N 0.750
30143.m001162 Ricinus communis 30143.m001162 N 0.750
SB04G037410 Sorghum bicolor Sb04g037410 N 0.749
ppa000898m Prunus persica ppa000898m N 0.748
APUM1 Arabidopsis thaliana AT2G29200-TAIR-G N 0.746
Glyma10g35290.1 Glycine max Glyma10g35290.1 N 0.746
Glyma20g32230.1 Glycine max Glyma20g32230.1 N 0.745
Medtr1g120450 Medicago truncatula Medtr1g120450 N 0.744
APUM2 Arabidopsis thaliana AT2G29190-TAIR-G N 0.743
APUM3 Arabidopsis thaliana AT2G29140-TAIR-G N 0.743
GRMZM2G123537 Zea mays GRMZM2G123537 N 0.742
BRADI3G55540 Brachypodium distachyon BRADI3G55540 N 0.742
GSVIVG00031557001 Vitis vinifera GSVIVG00031557001 N 0.739
XM_002880988.1 Arabidopsis lyrata fgenesh2_kg.4__898__AT2G29200.1 N 0.739
XM_002879157.1 Arabidopsis lyrata fgenesh2_kg.4__893__AT2G29140.1 N 0.739
scaffold_4100004.1 Arabidopsis lyrata scaffold_4100004.1 N 0.739
MDP0000191652 Malus x domestica MDP0000191652 N 0.736
APUM4 Arabidopsis thaliana AT3G10360-TAIR-G N 0.736
XM_002884744.1 Arabidopsis lyrata scaffold_301182.1 N 0.736
mgf006786m Mimulus guttatus mgf006786m N 0.732
ppa016404m Prunus persica ppa016404m N 0.730
MDP0000176743 Malus x domestica MDP0000176743 N 0.728
mgf011401m Mimulus guttatus mgf011401m N 0.727
MDP0000313902 Malus x domestica MDP0000313902 N 0.726
GSVIVG00029553001 Vitis vinifera GSVIVG00029553001 N 0.725
Glyma09g06460.1 Glycine max Glyma09g06460.1 N 0.724
Glyma15g17680.1 Glycine max Glyma15g17680.1 N 0.724
Cucsa.149730 Cucumis sativus Cucsa.149730 N 0.719
MDP0000265231 Malus x domestica MDP0000265231 N 0.719
PK12245.1 Cannabis sativa PK12245.1 N 0.719
30169.m006300 Ricinus communis 30169.m006300 N 0.719
MDP0000277305 Malus x domestica MDP0000277305 N 0.719
LOC_Os08g40830 Oryza sativa LOC_Os08g40830 N 0.716
BGIOSIBCE028530 Oryza indica BGIOSIBCE028530 N 0.716
MDP0000119814 Malus x domestica MDP0000119814 N 0.714
GRMZM2G035118 Zea mays GRMZM2G035118 N 0.713
cassava9350.m1 Manihot esculenta cassava9350.m1 N 0.712
Medtr5g087730 Medicago truncatula Medtr5g087730 N 0.710
BRADI3G40520 Brachypodium distachyon BRADI3G40520 N 0.710
Sb07g026995 Sorghum bicolor Sb07g026995 N 0.709
GRMZM2G449123 Zea mays GRMZM2G449123 N 0.708
B9HK27_POPTR Populus trichocarpa POPTR_0008s00490 N 0.705
cassava43126.valid.m1 Manihot esculenta cassava43126.valid.m1 N 0.701
POPTR_0022s00840 Populus trichocarpa POPTR_0022s00840 N 0.701