GH16919 (Drosophila grimshawi)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 FBgn0124390 T17087_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.831
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.831
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.792
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.792
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.792
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.792
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0150825 CSD 47 117

Links

Other CSD family RBPs
Other Drosophila grimshawi RBPs

179 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
133388 Helobdella robusta 133388 I 0.704
146547 Helobdella robusta 146547 I 0.718
AAA49715 Xenopus laevis AAA49715 I 0.806
AAA49716 Xenopus laevis AAA49716 I 0.792
AAA49924 Xenopus laevis AAA49924 I 0.778
AAEL001375 Aedes aegypti AAEL001375 I 0.944
AAH41191 Xenopus laevis AAH41191 I 0.806
AAH42217 Xenopus laevis AAH42217 I 0.806
AAI06324 Xenopus laevis AAI06324 I 0.806
AAI30161 Xenopus laevis AAI30161 I 0.806
AAI55914 Xenopus laevis AAI55914 I 0.778
AAI55915 Xenopus laevis AAI55915 I 0.792
AAI69704 Xenopus laevis AAI69704 I 0.792
ybx2-a Xenopus laevis AAI69706 D 0.792
AGAP006108 Anopheles gambiae AGAP006108 I 0.944
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.930
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.930
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.930
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.775
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.704
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.887
Bm1_57515 Brugia malayi Bm1_57515 I 0.718
CAA42778 Xenopus laevis CAA42778 I 0.806
CBG02981 Caenorhabditis briggsae CBG02981 I 0.704
CBN16711 Caenorhabditis brenneri CBN16711 I 0.718
CRE01789 Caenorhabditis remanei CRE01789 I 0.718
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.887
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.778
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.806
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.806
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.806
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.750
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.806
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.712
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.704
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.792
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.806
YBX2 Canis familiaris ENSCAFG00000016128 I 0.806
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.775
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.775
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.806
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.736
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.806
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.761
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.792
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.806
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.704
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.746
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.806
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.732
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.750
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.746
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.736
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.718
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.806
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.806
CSDA Cavia porcellus ENSCPOG00000011329 I 0.806
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.750
ybx1 Danio rerio ENSDARG00000004757 I 0.806
Csda Dipodomys ordii ENSDORG00000009103 I 0.806
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.806
LOC100072964 Equus caballus ENSECAG00000009996 I 0.806
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.792
LOC100065107 Equus caballus ENSECAG00000013777 I 0.806
LOC100067336 Equus caballus ENSECAG00000023592 I 0.806
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.806
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.750
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.806
CSDA Echinops telfairi ENSETEG00000002557 I 0.806
YBX2 Homo sapiens ENSG00000006047 D 0.792
CSDA Homo sapiens ENSG00000060138 I 0.806
YB-1 Homo sapiens ENSG00000065978 D 0.806
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.806
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.764
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.806
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.806
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.806
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.792
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.792
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.806
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.806
CSDA Loxodonta africana ENSLAFG00000017247 I 0.806
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.806
YBX1 Microcebus murinus ENSMICG00000014984 I 0.806
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.761
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.803
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.778
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.806
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.806
CSDA Macaca mulatta ENSMMUG00000022469 I 0.806
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.806
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.792
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.806
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.792
CSDA Monodelphis domestica ENSMODG00000018248 I 0.806
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.792
Ybx2 Mus musculus ENSMUSG00000018554 I 0.806
Ybx1 Mus musculus ENSMUSG00000028639 I 0.806
Csda Mus musculus ENSMUSG00000030189 I 0.806
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.806
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.806
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.806
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.806
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.764
CSDA Procavia capensis ENSPCAG00000001397 I 0.764
YBX2 Procavia capensis ENSPCAG00000008019 I 0.806
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.806
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.806
CSDA Pan troglodytes ENSPTRG00000004681 I 0.806
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.792
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.806
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.806
Csda Rattus norvegicus ENSRNOG00000005480 I 0.806
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.792
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.806
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.792
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.806
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.750
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.746
YBX2 Sorex araneus ENSSARG00000000488 I 0.806
CSDA Sus scrofa ENSSSCG00000000633 I 0.806
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.764
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.732
YBX2 Sus scrofa ENSSSCG00000017938 I 0.806
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.806
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.806
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.806
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.806
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.806
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.792
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.806
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.778
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.806
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.732
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.806
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.806
csda Xenopus tropicalis ENSXETG00000016239 I 0.806
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.761
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.845
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.792
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.803
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.761
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.761
cey-1 Caenorhabditis elegans F33A8.3 I 0.718
yps Drosophila melanogaster FBgn0022959 I 0.972
GF10852 Drosophila ananassae FBgn0087892 I 0.986
GI13673 Drosophila mojavensis FBgn0136428 I 1.000
GL15684 Drosophila persimilis FBgn0153288 I 0.986
GM24682 Drosophila sechellia FBgn0179545 I 0.972
GD12750 Drosophila simulans FBgn0184477 I 0.972
GJ14010 Drosophila virilis FBgn0201228 I 1.000
GK16710 Drosophila willistoni FBgn0218712 I 0.986
GE20150 Drosophila yakuba FBgn0237472 I 0.972
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.986
gw1.1047.6.1 Capitella teleta gw1.1047.6.1 I 0.718
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.746
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.775
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.775
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.761
gw1.4124.2.1 Capitella teleta gw1.4124.2.1 I 0.704
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.845
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.761
ISCW005281 Ixodes scapularis ISCW005281 I 0.803
Minc12652 Meloidogyne incognita Minc12652 I 0.718
nasonia_NCBI_hmm1188384 Nasonia vitripennis nasonia_NCBI_hmm1188384 I 0.803
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.887
P21573 Xenopus laevis P21573 I 0.806
P21574 Xenopus laevis P21574 I 0.792
P45441 Xenopus laevis P45441 I 0.778
PHUM156710 Pediculus humanus PHUM156710 I 0.901
PHUM156720 Pediculus humanus PHUM156720 I 0.915
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.746
Q00436 Xenopus laevis Q00436 I 0.806
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.775
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.718
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.845
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.761
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.761
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.845