PHUM156710 (Pediculus humanus)
CSD

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00313 (CSD) IPR002059 PHUM156710 T17133_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
YB-1
M111_0.6 		Homo sapiens AACAUCD RNAcompete
Ray et al.(2013)
RNCMPT00116 		0.845
YB-1
M081_0.6 		Homo sapiens AACAUC RNAcompete
Ray et al.(2013)
RNCMPT00083 		0.845
ybx2-a
M260_0.6 		Xenopus laevis GCCANACCAYCGC SELEX
Cook et al.(2011)
130_11376140 		0.819
ybx2-a
M254_0.6 		Xenopus laevis KAACAUCU SELEX
Cook et al.(2011)
115_7499328 		0.819
ybx2-a
M250_0.6 		Xenopus laevis UAACAUC SELEX
Cook et al.(2011)
114_7499328 		0.819
YBX2
M082_0.6 		Homo sapiens AACAWCD RNAcompete
Ray et al.(2013)
RNCMPT00084 		0.792
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PHUM156710-PA CSD 24 94

Links

Other CSD family RBPs
Other Pediculus humanus RBPs

186 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
133388 Helobdella robusta 133388 I 0.746
146547 Helobdella robusta 146547 I 0.732
AAA49715 Xenopus laevis AAA49715 I 0.819
AAA49716 Xenopus laevis AAA49716 I 0.819
AAA49924 Xenopus laevis AAA49924 I 0.806
AAEL001375 Aedes aegypti AAEL001375 I 0.887
AAH41191 Xenopus laevis AAH41191 I 0.819
AAH42217 Xenopus laevis AAH42217 I 0.819
AAI06324 Xenopus laevis AAI06324 I 0.819
AAI30161 Xenopus laevis AAI30161 I 0.819
AAI55914 Xenopus laevis AAI55914 I 0.806
AAI55915 Xenopus laevis AAI55915 I 0.819
AAI69704 Xenopus laevis AAI69704 I 0.819
ybx2-a Xenopus laevis AAI69706 D 0.819
AGAP006108 Anopheles gambiae AGAP006108 I 0.873
amel4_ncbi_hmm3751 Tribolium castaneum amel4_ncbi_hmm3751 I 0.915
amel4_ncbi_hmm3751 Apis mellifera amel4_ncbi_hmm3751 I 0.915
amel4_ncbi_hmm4087 Apis mellifera amel4_ncbi_hmm4087 I 0.915
Ame_R019916 Ailuropoda melanoleuca Ame_R019916 I 0.761
Aqu1.220698 Amphimedon queenslandica Aqu1.220698 I 0.761
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.845
Bm1_57515 Brugia malayi Bm1_57515 I 0.746
CAA42778 Xenopus laevis CAA42778 I 0.819
CBG02981 Caenorhabditis briggsae CBG02981 I 0.718
CBN16711 Caenorhabditis brenneri CBN16711 I 0.732
CJA05984 Caenorhabditis japonica CJA05984 I 0.704
CRE01789 Caenorhabditis remanei CRE01789 I 0.732
DGIL_AUG5s15730g8t2 Acyrtosiphon pisum DGIL_AUG5s15730g8t2 I 0.873
ENSBTAG00000006133 Bos taurus ENSBTAG00000006133 I 0.792
A5D7M4_BOVIN Bos taurus ENSBTAG00000009126 I 0.806
A5D7Q4_BOVIN Bos taurus ENSBTAG00000009663 I 0.819
YBOX1_BOVIN Bos taurus ENSBTAG00000017368 I 0.819
ENSCAFG00000000872 Canis familiaris ENSCAFG00000000872 I 0.764
ENSCAFG00000002541 Canis familiaris ENSCAFG00000002541 I 0.819
ENSCAFG00000005471 Canis familiaris ENSCAFG00000005471 I 0.726
ENSCAFG00000007977 Canis familiaris ENSCAFG00000007977 I 0.718
XP_856029.1 Canis familiaris ENSCAFG00000010117 I 0.806
Q9N1Q2_CANFA Canis familiaris ENSCAFG00000013401 I 0.819
YBX2 Canis familiaris ENSCAFG00000016128 I 0.806
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.775
XM_549034.2 Canis familiaris ENSCAFG00000016523 I 0.775
CSDA Choloepus hoffmanni ENSCHOG00000011988 I 0.819
Q4H2L7_CIOIN Ciona intestinalis ENSCING00000010654 I 0.778
ENSCJAG00000000083 Callithrix jacchus ENSCJAG00000000083 I 0.704
LOC100401646 Callithrix jacchus ENSCJAG00000003155 I 0.819
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.775
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.806
LOC100403904 Callithrix jacchus ENSCJAG00000016581 I 0.806
ENSCJAG00000018092 Callithrix jacchus ENSCJAG00000018092 I 0.704
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.746
LOC100396927 Callithrix jacchus ENSCJAG00000021660 I 0.819
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.746
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.764
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.761
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.750
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.732
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.806
ENSCPOG00000010888 Cavia porcellus ENSCPOG00000010888 I 0.819
CSDA Cavia porcellus ENSCPOG00000011329 I 0.819
ENSCSAVG00000003053 Ciona savignyi ENSCSAVG00000003053 I 0.792
ybx1 Danio rerio ENSDARG00000004757 I 0.819
Csda Dipodomys ordii ENSDORG00000009103 I 0.819
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.819
LOC100072964 Equus caballus ENSECAG00000009996 I 0.806
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.806
LOC100065107 Equus caballus ENSECAG00000013777 I 0.819
LOC100067336 Equus caballus ENSECAG00000023592 I 0.819
ENSEEUG00000005657 Erinaceus europaeus ENSEEUG00000005657 I 0.819
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.764
CSDA Erinaceus europaeus ENSEEUG00000010415 I 0.819
CSDA Echinops telfairi ENSETEG00000002557 I 0.819
YBX2 Homo sapiens ENSG00000006047 D 0.792
CSDA Homo sapiens ENSG00000060138 I 0.819
YB-1 Homo sapiens ENSG00000065978 D 0.819
YBX1 Gasterosteus aculeatus ENSGACG00000006447 I 0.819
ENSGACG00000019392 Gasterosteus aculeatus ENSGACG00000019392 I 0.806
YBOX1_CHICK Gallus gallus ENSGALG00000004848 I 0.819
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.819
CSDA Gorilla gorilla ENSGGOG00000001352 I 0.819
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.792
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.792
YBX1 Loxodonta africana ENSLAFG00000007597 I 0.819
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.806
CSDA Loxodonta africana ENSLAFG00000017247 I 0.819
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.819
YBX1 Microcebus murinus ENSMICG00000014984 I 0.819
ENSMLUG00000003812 Myotis lucifugus ENSMLUG00000003812 I 0.761
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.803
ENSMLUG00000004747 Myotis lucifugus ENSMLUG00000004747 I 0.792
CSDA Myotis lucifugus ENSMLUG00000007476 I 0.819
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.819
CSDA Macaca mulatta ENSMMUG00000022469 I 0.819
YBX2 Macaca mulatta ENSMMUG00000022712 I 0.806
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.806
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.819
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.792
CSDA Monodelphis domestica ENSMODG00000018248 I 0.819
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.833
Ybx2 Mus musculus ENSMUSG00000018554 I 0.806
Ybx1 Mus musculus ENSMUSG00000028639 I 0.819
Csda Mus musculus ENSMUSG00000030189 I 0.819
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.819
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.819
CSDA Otolemur garnettii ENSOGAG00000013245 I 0.704
YBX1 Ochotona princeps ENSOPRG00000008050 I 0.704
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.806
Q8AXS2_ORYLA Oryzias latipes ENSORLG00000004225 I 0.819
Q90WH1_ORYLA Oryzias latipes ENSORLG00000006269 I 0.806
CSDA Procavia capensis ENSPCAG00000001397 I 0.750
YBX2 Procavia capensis ENSPCAG00000008019 I 0.806
ENSPPYG00000004279 Pongo pygmaeus ENSPPYG00000004279 I 0.819
XR_021659.1 Pan troglodytes ENSPTRG00000000615 I 0.819
CSDA Pan troglodytes ENSPTRG00000004681 I 0.819
XR_022686.1 Pan troglodytes ENSPTRG00000008673 I 0.792
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.819
CSDA Pteropus vampyrus ENSPVAG00000006740 I 0.819
Csda Rattus norvegicus ENSRNOG00000005480 I 0.819
ENSRNOG00000006596 Rattus norvegicus ENSRNOG00000006596 I 0.806
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.806
ENSRNOG00000023786 Rattus norvegicus ENSRNOG00000023786 I 0.806
YBOX1_RAT Rattus norvegicus ENSRNOG00000030807 I 0.819
Ybx1 Rattus norvegicus ENSRNOG00000032902 I 0.764
ENSRNOG00000043268 Rattus norvegicus ENSRNOG00000043268 I 0.761
YBX2 Sorex araneus ENSSARG00000000488 I 0.792
CSDA Sus scrofa ENSSSCG00000000633 I 0.819
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.778
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.732
YBX2 Sus scrofa ENSSSCG00000017938 I 0.806
ENSSTOG00000000116 Spermophilus tridecemlineatus ENSSTOG00000000116 I 0.819
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.806
CSDA Tupaia belangeri ENSTBEG00000012570 I 0.819
CSDA Taeniopygia guttata ENSTGUG00000012047 I 0.819
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.819
ENSTNIG00000010139 Tetraodon nigroviridis ENSTNIG00000010139 I 0.778
YBX1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.819
ENSTRUG00000011813 Takifugu rubripes ENSTRUG00000011813 I 0.792
Q90WH2_FUGRU Takifugu rubripes ENSTRUG00000015333 I 0.819
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.746
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.819
ybx1 Xenopus tropicalis ENSXETG00000013436 I 0.819
csda Xenopus tropicalis ENSXETG00000016239 I 0.833
estExt_fgeneshTA2_pg.C_60554 Trichoplax adhaerens estExt_fgeneshTA2_pg.C_60554 I 0.803
estExt_Genewise1Plus.C_1630040 Capitella teleta estExt_Genewise1Plus.C_1630040 I 0.901
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.847
e_gw.71.100.1 Nematostella vectensis e_gw.71.100.1 I 0.845
e_gw1.21.99.1 Capitella teleta e_gw1.21.99.1 I 0.817
e_gw1.343.39.1 Capitella teleta e_gw1.343.39.1 I 0.732
e_gw1.9027.2.1 Capitella teleta e_gw1.9027.2.1 I 0.817
cey-1 Caenorhabditis elegans F33A8.3 I 0.732
yps Drosophila melanogaster FBgn0022959 I 0.901
GF10852 Drosophila ananassae FBgn0087892 I 0.915
GH16919 Drosophila grimshawi FBgn0124390 I 0.901
GI13673 Drosophila mojavensis FBgn0136428 I 0.901
GL15684 Drosophila persimilis FBgn0153288 I 0.915
GM24682 Drosophila sechellia FBgn0179545 I 0.901
GD12750 Drosophila simulans FBgn0184477 I 0.901
GJ14010 Drosophila virilis FBgn0201228 I 0.901
GK16710 Drosophila willistoni FBgn0218712 I 0.915
GE20150 Drosophila yakuba FBgn0237472 I 0.901
GA23502-RA Drosophila pseudoobscura FBgn0244903 I 0.915
gw1.1047.6.1 Capitella teleta gw1.1047.6.1 I 0.761
gw1.1098.8.1 Capitella teleta gw1.1098.8.1 I 0.803
gw1.11296.2.1 Capitella teleta gw1.11296.2.1 I 0.831
gw1.342.14.1 Capitella teleta gw1.342.14.1 I 0.746
gw1.367.31.1 Capitella teleta gw1.367.31.1 I 0.831
gw1.4.101.1 Capitella teleta gw1.4.101.1 I 0.817
gw1.4124.2.1 Capitella teleta gw1.4124.2.1 I 0.732
gw1.598.14.1 Capitella teleta gw1.598.14.1 I 0.750
gw1.79.157.1 Lottia gigantea gw1.79.157.1 I 0.887
gw1.93.56.1 Capitella teleta gw1.93.56.1 I 0.817
ISCW005281 Ixodes scapularis ISCW005281 I 0.803
Minc12652 Meloidogyne incognita Minc12652 I 0.718
nasonia_NCBI_hmm1188384 Nasonia vitripennis nasonia_NCBI_hmm1188384 I 0.789
NCBI_GNO_0300554 Daphnia pulex NCBI_GNO_0300554 I 0.873
P21573 Xenopus laevis P21573 I 0.819
P21574 Xenopus laevis P21574 I 0.819
P45441 Xenopus laevis P45441 I 0.806
PHUM156720 Pediculus humanus PHUM156720 I 0.944
Ppa-cey-1 Pristionchus pacificus PPA28011 I 0.761
Q00436 Xenopus laevis Q00436 I 0.819
SNAPOd2T00011389001 Oikopleura dioica SNAPOd2T00011389001 I 0.845
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.746
XP_001178393.1 Strongylocentrotus purpuratus XP_001178393.1 I 0.859
XP_002154000.1 Hydra magnipapillata XP_002154000.1 I 0.789
XP_002159745.1 Hydra magnipapillata XP_002159745.1 I 0.789
XP_785816.1 Strongylocentrotus purpuratus XP_785816.1 I 0.859