CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PCBP3
(
Microcebus murinus
)
KH
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00013 (KH_1)
IPR018111
ENSMICG00000012679
T19014_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
Pcbp3
M188_0.6
Mus musculus
UUUYCC
RNAcompete
Ray et al.(2013)
RNCMPT00215
0.904
PCBP2
M043_0.6
Homo sapiens
CCYYCCH
RNAcompete
Ray et al.(2013)
RNCMPT00044
0.787
pcbp2
M211_0.6
Danio rerio
WWUCCC
RNAcompete
Ray et al.(2013)
RNCMPT00246
0.787
Pcbp1
M207_0.6
Mus musculus
CYUUCC
RNAcompete
Ray et al.(2013)
RNCMPT00239
0.766
PCBP1
M177_0.6
Homo sapiens
CCWWHCC
RNAcompete
Ray et al.(2013)
RNCMPT00186
0.766
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMICP00000011548
KH
30
74
AKGETVKKMREESAARINISEGNCPERIVTITGPTDAIFKAFAMI
ENSMICP00000011548
KH
98
161
TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQI
ENSMICP00000011548
KH
242
304
THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLI
Links
Other
KH
family RBPs
Other
Microcebus murinus
RBPs
96 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Ame_R009875
Ailuropoda melanoleuca
Ame_R009875
N
0.000
CELF1
Anolis carolinensis
ENSACAG00000002114
N
0.000
A7MB95_BOVIN
Bos taurus
ENSBTAG00000002520
N
0.000
CELF1
Canis familiaris
ENSCAFG00000008452
N
0.000
LOC100392717
Callithrix jacchus
ENSCJAG00000020133
N
0.000
CELF1
Cavia porcellus
ENSCPOG00000007871
N
0.000
CELF1
Dasypus novemcinctus
ENSDNOG00000009523
N
0.000
Celf1
Dipodomys ordii
ENSDORG00000013721
N
0.000
CELF1
Equus caballus
ENSECAG00000007741
N
0.000
CELF1
Erinaceus europaeus
ENSEEUG00000009782
N
0.000
CELF1
Homo sapiens
ENSG00000149187
N
0.000
CELF1
Loxodonta africana
ENSLAFG00000003484
N
0.000
CELF1
Macropus eugenii
ENSMEUG00000007763
N
0.000
CELF2
Macropus eugenii
ENSMEUG00000015276
N
0.000
CELF1
Macaca mulatta
ENSMMUG00000011657
N
0.000
CELF1
Monodelphis domestica
ENSMODG00000019913
N
0.000
Celf1
Mus musculus
ENSMUSG00000005506
N
0.000
CELF1
Ornithorhynchus anatinus
ENSOANG00000007896
N
0.000
CELF1
Oryctolagus cuniculus
ENSOCUG00000001311
N
0.000
CELF1
Ochotona princeps
ENSOPRG00000003239
N
0.000
CELF1
Procavia capensis
ENSPCAG00000002631
N
0.000
CELF2
Procavia capensis
ENSPCAG00000010882
N
0.000
ENSPPYG00000003302
Pongo pygmaeus
ENSPPYG00000003302
N
0.000
CELF1
Pan troglodytes
ENSPTRG00000003568
N
0.000
Cugbp1
Rattus norvegicus
ENSRNOG00000010379
N
0.000
CELF1
Sorex araneus
ENSSARG00000003207
N
0.000
CELF1
Tupaia belangeri
ENSTBEG00000005140
N
0.000
CELF1
Tursiops truncatus
ENSTTRG00000014157
N
0.000
CELF2
Tursiops truncatus
ENSTTRG00000014665
N
0.000
CELF1
Vicugna pacos
ENSVPAG00000000336
N
0.000