ENSTRUG00000004615 (Takifugu rubripes)
KH

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00013 (KH_1) IPR018111 ENSTRUG00000004615 T19634_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
KHSRP
M342_0.6 		Homo sapiens Sequence logo not available CnsCyUCC RIP-chip
Cook et al.(2011)
906_17437629.3 		0.712
KHSRP
M341_0.6 		Homo sapiens Sequence logo not available nUGUrUrU RIP-chip
Cook et al.(2011)
906_17437629.2 		0.712
KHSRP
M340_0.6 		Homo sapiens Sequence logo not available UwUAUUUw RIP-chip
Cook et al.(2011)
906_17437629.1 		0.712
KHSRP
M339_0.6 		Homo sapiens Sequence logo not available UAUUUAUw RIP-chip
Cook et al.(2011)
906_17437629 		0.712
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000010973 KH 87 149
ENSTRUP00000010973 KH 172 236
ENSTRUP00000010973 KH 260 322
ENSTRUP00000010973 KH 358 423
ENSTRUP00000010974 KH 128 190
ENSTRUP00000010974 KH 213 277
ENSTRUP00000010974 KH 301 363
ENSTRUP00000010974 KH 399 464
ENSTRUP00000010975 KH 101 163
ENSTRUP00000010975 KH 186 250
ENSTRUP00000010975 KH 280 342
ENSTRUP00000010975 KH 378 443
ENSTRUP00000010976 KH 90 152
ENSTRUP00000010976 KH 175 239
ENSTRUP00000010976 KH 263 325
ENSTRUP00000010976 KH 361 426
ENSTRUP00000010977 KH 78 140
ENSTRUP00000010977 KH 163 227
ENSTRUP00000010977 KH 251 313
ENSTRUP00000010977 KH 349 414
ENSTRUP00000010978 KH 78 140
ENSTRUP00000010978 KH 163 227
ENSTRUP00000010978 KH 251 313
ENSTRUP00000010978 KH 349 414
ENSTRUP00000010979 KH 99 161
ENSTRUP00000010979 KH 184 248
ENSTRUP00000010979 KH 272 334
ENSTRUP00000010979 KH 370 435

Links

Other KH family RBPs
Other Takifugu rubripes RBPs

104 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH44277 Xenopus laevis AAH44277 I 0.856
AAH60400 Xenopus laevis AAH60400 N 0.748
AAH70981 Xenopus laevis AAH70981 I 0.860
AAI61696 Xenopus laevis AAI61696 I 0.720
AAI69815 Xenopus laevis AAI69815 I 0.860
AAI69923 Xenopus laevis AAI69923 I 0.716
AAN77160 Xenopus laevis AAN77160 I 0.716
AAN77161 Xenopus laevis AAN77161 I 0.840
Ame_R003042 Ailuropoda melanoleuca Ame_R003042 N 0.760
Ame_R010564 Ailuropoda melanoleuca Ame_R010564 I 0.860
Ame_R016412 Ailuropoda melanoleuca Ame_R016412 I 0.712
FUBP1 Anolis carolinensis ENSACAG00000006310 I 0.872
KHSRP Anolis carolinensis ENSACAG00000015398 I 0.712
Q08DJ3_BOVIN Bos taurus ENSBTAG00000008926 I 0.864
A6QP83_BOVIN Bos taurus ENSBTAG00000013072 N 0.756
LOC505564 Bos taurus ENSBTAG00000021018 I 0.712
KHSRP Canis familiaris ENSCAFG00000018667 I 0.712
FUBP3 Canis familiaris ENSCAFG00000019942 N 0.756
FUBP1 Canis familiaris ENSCAFG00000020361 I 0.864
FUBP1 Choloepus hoffmanni ENSCHOG00000008177 I 0.860
FUBP1 Callithrix jacchus ENSCJAG00000007062 I 0.864
KHSRP Callithrix jacchus ENSCJAG00000016627 I 0.712
LOC100399862 Callithrix jacchus ENSCJAG00000020542 N 0.767
FUBP1 Cavia porcellus ENSCPOG00000002757 I 0.864
KHSRP Cavia porcellus ENSCPOG00000005140 I 0.712
FUBP3 Cavia porcellus ENSCPOG00000010315 N 0.764
ENSDARG00000007049 Danio rerio ENSDARG00000007049 N 0.748
KHSRP Danio rerio ENSDARG00000026489 I 0.700
fubp1 Danio rerio ENSDARG00000029248 I 0.934
FUBP3 Dasypus novemcinctus ENSDNOG00000014533 N 0.744
Khsrp Dipodomys ordii ENSDORG00000002447 I 0.712
Fubp1 Dipodomys ordii ENSDORG00000016534 I 0.864
FUBP1 Equus caballus ENSECAG00000010867 I 0.864
LOC100069755 Equus caballus ENSECAG00000011500 N 0.733
LOC100065608 Equus caballus ENSECAG00000018305 I 0.712
KHSRP Felis catus ENSFCAG00000003731 I 0.712
FUBP3 Felis catus ENSFCAG00000005113 N 0.760
KHSRP Homo sapiens ENSG00000088247 D 0.712
FUBP3 Homo sapiens ENSG00000107164 N 0.764
FUBP1 Homo sapiens ENSG00000162613 I 0.860
ENSGACG00000016563 Gasterosteus aculeatus ENSGACG00000016563 I 0.950
FUBP3 Gasterosteus aculeatus ENSGACG00000016704 N 0.713
Q5ZM76_CHICK Gallus gallus ENSGALG00000003941 N 0.760
Q5ZHW0_CHICK Gallus gallus ENSGALG00000008939 I 0.861
KHSRP Gorilla gorilla ENSGGOG00000007028 I 0.712
FUBP3 Gorilla gorilla ENSGGOG00000011318 N 0.764
FUBP1 Gorilla gorilla ENSGGOG00000027554 I 0.860
KHSRP Loxodonta africana ENSLAFG00000002426 I 0.712
FUBP1 Loxodonta africana ENSLAFG00000003273 I 0.864
FUBP3 Loxodonta africana ENSLAFG00000011611 N 0.756
FUBP3 Meleagris gallopavo ENSMGAG00000005342 N 0.760
FUBP1 Meleagris gallopavo ENSMGAG00000009424 I 0.860
KHSRP Microcebus murinus ENSMICG00000007863 I 0.712
FUBP1 Microcebus murinus ENSMICG00000014463 N 0.739
FUBP3 Microcebus murinus ENSMICG00000015452 N 0.764
FUBP3 Myotis lucifugus ENSMLUG00000008743 N 0.713
FUBP1 Myotis lucifugus ENSMLUG00000014802 I 0.864
FUBP1 Macaca mulatta ENSMMUG00000002899 I 0.860
KHSRP Macaca mulatta ENSMMUG00000005597 I 0.712
FUBP3 Macaca mulatta ENSMMUG00000008249 N 0.764
FUBP3 Monodelphis domestica ENSMODG00000012105 N 0.756
Khsrp Mus musculus ENSMUSG00000007670 I 0.712
Fubp3 Mus musculus ENSMUSG00000026843 N 0.752
Fubp1 Mus musculus ENSMUSG00000028034 I 0.860
FUBP3 Ornithorhynchus anatinus ENSOANG00000001042 N 0.775
FUBP1 Ornithorhynchus anatinus ENSOANG00000009777 I 0.864
FUBP1 Oryctolagus cuniculus ENSOCUG00000002225 I 0.815
FUBP1 Otolemur garnettii ENSOGAG00000014233 I 0.864
FUBP1 Ochotona princeps ENSOPRG00000001175 N 0.775
FUBP3 Ochotona princeps ENSOPRG00000008648 N 0.760
KHSRP Ochotona princeps ENSOPRG00000010594 I 0.708
ENSORLG00000003540 Oryzias latipes ENSORLG00000003540 I 0.957
FUBP3 Oryzias latipes ENSORLG00000007103 N 0.713
FUBP3 Oryzias latipes ENSORLG00000017565 N 0.725
FUBP3 Procavia capensis ENSPCAG00000001717 N 0.736
FUBP1 Procavia capensis ENSPCAG00000012617 I 0.864
ENSPPYG00000001219 Pongo pygmaeus ENSPPYG00000001219 I 0.860
ENSPPYG00000009454 Pongo pygmaeus ENSPPYG00000009454 I 0.712
ENSPPYG00000019693 Pongo pygmaeus ENSPPYG00000019693 N 0.764
FUBP1 Pan troglodytes ENSPTRG00000000888 I 0.860
KHSRP Pan troglodytes ENSPTRG00000010364 I 0.712
FUBP3 Pan troglodytes ENSPTRG00000021474 N 0.764
FUBP3 Pteropus vampyrus ENSPVAG00000001510 N 0.771
KHSRP Pteropus vampyrus ENSPVAG00000007251 I 0.712
FUBP1 Pteropus vampyrus ENSPVAG00000014637 N 0.708
Fubp3 Rattus norvegicus ENSRNOG00000009139 N 0.756
ENSSSCG00000003767 Sus scrofa ENSSSCG00000003767 I 0.864
ENSSSCG00000003771 Sus scrofa ENSSSCG00000003771 I 0.864
KHSRP Sus scrofa ENSSSCG00000013538 I 0.712
KHSRP Spermophilus tridecemlineatus ENSSTOG00000002371 I 0.712
FUBP1 Spermophilus tridecemlineatus ENSSTOG00000014312 I 0.860
FUBP3 Taeniopygia guttata ENSTGUG00000004662 N 0.756
FUBP1 Taeniopygia guttata ENSTGUG00000006841 I 0.848
FUBP3 Tetraodon nigroviridis ENSTNIG00000005858 N 0.729
FUBP3 Tetraodon nigroviridis ENSTNIG00000009019 N 0.713
FUBP3 Takifugu rubripes ENSTRUG00000013259 N 0.717
FUBP3 Takifugu rubripes ENSTRUG00000018658 N 0.705
FUBP1 Tarsius syrichta ENSTSYG00000000148 I 0.864
FUBP1 Tursiops truncatus ENSTTRG00000000096 I 0.864
KHSRP Tursiops truncatus ENSTTRG00000010390 I 0.712
FUBP1 Vicugna pacos ENSVPAG00000004709 I 0.864
fubp3 Xenopus tropicalis ENSXETG00000001344 N 0.756
fubp1 Xenopus tropicalis ENSXETG00000013137 I 0.875