BGIOSIBCE011312 (Oryza indica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BGIOSIBCE011312 T32944_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.740
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
BGIOSIBCE011312 RRM 23 78
BGIOSIBCE011312 RRM 118 195
BGIOSIBCE011312 RRM 262 324

Links

Other RRM family RBPs
Other Oryza indica RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28649.m000223 Ricinus communis 28649.m000223 I 0.803
30169.m006527 Ricinus communis 30169.m006527 I 0.719
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.764
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.714
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.898
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.788
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.704
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.809
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.704
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.704
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.813
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.724
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.747
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.740
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.709
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.714
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.804
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.714
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.818
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.709
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.803
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.829
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.719
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.740
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.702
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.944
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.808
MDP0000796160 Malus x domestica MDP0000796160 I 0.794
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.705
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.715
PK14390.1 Cannabis sativa PK14390.1 I 0.789
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.804
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.779
ppa004961m Prunus persica ppa004961m I 0.804
ppa005791m Prunus persica ppa005791m I 0.714
SB01G034060 Sorghum bicolor Sb01g034060 I 0.864
SB03G028150 Sorghum bicolor Sb03g028150 I 0.702
SB07G021250 Sorghum bicolor Sb07g021250 I 0.803
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.763