LOC_Os03g25980 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os03g25980 T44996_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.783
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os03g25980.1 RRM 23 78
LOC_Os03g25980.1 RRM 118 184
LOC_Os03g25980.1 RRM 251 313
LOC_Os03g25980.2 RRM 23 78
LOC_Os03g25980.2 RRM 118 184
LOC_Os03g25980.2 RRM 251 313

Links

Other RRM family RBPs
Other Oryza sativa RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.952
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.944
SB01G034060 Sorghum bicolor Sb01g034060 I 0.915
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.878
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.866
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.861
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.856
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.856
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.851
ppa004961m Prunus persica ppa004961m I 0.851
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.851
28649.m000223 Ricinus communis 28649.m000223 I 0.850
SB07G021250 Sorghum bicolor Sb07g021250 I 0.850
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.850
MDP0000796160 Malus x domestica MDP0000796160 I 0.840
PK14390.1 Cannabis sativa PK14390.1 I 0.835
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.834
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.824
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.809
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.807
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.791
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.783
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.783
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.766
30169.m006527 Ricinus communis 30169.m006527 I 0.761
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.761
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.757
ppa005791m Prunus persica ppa005791m I 0.755
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.755
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.755
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.755
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.750
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.750
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.746
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.745
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.745
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.745
SB03G028150 Sorghum bicolor Sb03g028150 I 0.743
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.743
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.739
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.734
MDP0000269393 Malus x domestica MDP0000269393 I 0.729
mgf005649m Mimulus guttatus mgf005649m I 0.725
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.706