B9IK00_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0017s12160 T45697_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.772
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0017s12160.1 RRM 19 76
POPTR_0017s12160.1 RRM 116 181
POPTR_0017s12160.1 RRM 252 314

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28649.m000223 Ricinus communis 28649.m000223 I 0.925
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.920
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.920
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.898
ppa004961m Prunus persica ppa004961m I 0.888
PK14390.1 Cannabis sativa PK14390.1 I 0.872
MDP0000796160 Malus x domestica MDP0000796160 I 0.861
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.861
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.856
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.856
SB01G034060 Sorghum bicolor Sb01g034060 I 0.824
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.824
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.819
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.803
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.798
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.798
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.793
SB07G021250 Sorghum bicolor Sb07g021250 I 0.793
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.787
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.786
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.779
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.772
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.772
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.772
30169.m006527 Ricinus communis 30169.m006527 I 0.767
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.762
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.762
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.762
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.757
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.751
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.751
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.751
ppa005791m Prunus persica ppa005791m I 0.751
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.746
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.746
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.741
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.738
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.735
mgf005649m Mimulus guttatus mgf005649m I 0.735
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.735
SB03G028150 Sorghum bicolor Sb03g028150 I 0.734
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.730
MDP0000269393 Malus x domestica MDP0000269393 I 0.725
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.723
mgf001230m Mimulus guttatus mgf001230m I 0.709