e_gw1.81.40.1 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw1.81.40.1 T50126_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6		 Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M185_0.6 RRM 20 78
M185_0.6 RRM 117 181
M185_0.6 RRM 248 311

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.81.40.1 RRM 20 78
e_gw1.81.40.1 RRM 117 181
e_gw1.81.40.1 RRM 248 311

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 1.000
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.856
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.830
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.825
PK14390.1 Cannabis sativa PK14390.1 I 0.825
28649.m000223 Ricinus communis 28649.m000223 I 0.825
MDP0000796160 Malus x domestica MDP0000796160 I 0.825
ppa004961m Prunus persica ppa004961m I 0.820
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.820
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.820
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.815
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.815
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.814
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.809
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.809
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.809
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.809
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.809
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.803
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.803
30169.m006527 Ricinus communis 30169.m006527 I 0.803
ppa005791m Prunus persica ppa005791m I 0.803
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.803
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.799
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.793
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.793
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.787
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.787
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.783
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.778
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.777
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.777
SB07G021250 Sorghum bicolor Sb07g021250 I 0.777
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.772
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.771
SB03G028150 Sorghum bicolor Sb03g028150 I 0.771
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.767
SB01G034060 Sorghum bicolor Sb01g034060 I 0.767
MDP0000269393 Malus x domestica MDP0000269393 I 0.766
mgf005649m Mimulus guttatus mgf005649m I 0.766
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.762
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.761
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.761
mgf001230m Mimulus guttatus mgf001230m I 0.755
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.740