PTB (Arabidopsis thaliana)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 AT3G01150-TAIR-G T32718_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.809
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
AT3G01150.1-P RRM 19 76
AT3G01150.1-P RRM 118 181
AT3G01150.1-P RRM 248 310
AT3G01150.2-P RRM 19 76
AT3G01150.2-P RRM 105 152
AT3G01150.2-P RRM 219 281

Links

Other RRM family RBPs
Other Arabidopsis thaliana RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.978
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.851
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.840
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.840
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.840
ppa004961m Prunus persica ppa004961m I 0.835
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.835
28649.m000223 Ricinus communis 28649.m000223 I 0.830
PK14390.1 Cannabis sativa PK14390.1 I 0.830
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.819
MDP0000796160 Malus x domestica MDP0000796160 I 0.819
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.809
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.809
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.809
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.809
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.806
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.798
SB01G034060 Sorghum bicolor Sb01g034060 I 0.798
SB07G021250 Sorghum bicolor Sb07g021250 I 0.790
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.790
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.787
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.786
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.785
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.785
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.780
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.777
ppa005791m Prunus persica ppa005791m I 0.774
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.774
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.774
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.774
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.774
30169.m006527 Ricinus communis 30169.m006527 I 0.774
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.774
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.769
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.769
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.764
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.758
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.758
mgf005649m Mimulus guttatus mgf005649m I 0.743
MDP0000269393 Malus x domestica MDP0000269393 I 0.742
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.741
mgf001230m Mimulus guttatus mgf001230m I 0.723
SB03G028150 Sorghum bicolor Sb03g028150 I 0.722
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.719
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.714