chr1.CM0141.270.nc (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr1.CM0141.270.nc T55796_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.815
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0141.270.nc RRM 19 76
chr1.CM0141.270.nc RRM 116 180
chr1.CM0141.270.nc RRM 248 310

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.935
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.930
ppa004961m Prunus persica ppa004961m I 0.904
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.893
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.893
PK14390.1 Cannabis sativa PK14390.1 I 0.888
MDP0000796160 Malus x domestica MDP0000796160 I 0.888
28649.m000223 Ricinus communis 28649.m000223 I 0.887
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.866
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.861
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.856
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.856
SB01G034060 Sorghum bicolor Sb01g034060 I 0.846
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.835
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.834
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.834
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.828
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.824
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.818
SB07G021250 Sorghum bicolor Sb07g021250 I 0.818
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.815
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.815
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.813
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.804
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.798
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.798
ppa005791m Prunus persica ppa005791m I 0.793
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.793
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.787
30169.m006527 Ricinus communis 30169.m006527 I 0.787
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.787
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.782
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.782
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.778
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.777
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.777
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.777
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.766
mgf005649m Mimulus guttatus mgf005649m I 0.762
mgf001230m Mimulus guttatus mgf001230m I 0.762
MDP0000269393 Malus x domestica MDP0000269393 I 0.761
SB03G028150 Sorghum bicolor Sb03g028150 I 0.749
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.747
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.745
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.727