ppa004961m (Prunus persica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ppa004961m T58349_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.820
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ppa004961m RRM 19 76
ppa004961m RRM 116 180
ppa004961m RRM 248 310

Links

Other RRM family RBPs
Other Prunus persica RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000796160 Malus x domestica MDP0000796160 I 0.968
PK14390.1 Cannabis sativa PK14390.1 I 0.957
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.946
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.946
28649.m000223 Ricinus communis 28649.m000223 I 0.941
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.925
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.909
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.904
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.904
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.888
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.851
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.840
SB01G034060 Sorghum bicolor Sb01g034060 I 0.840
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.835
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.835
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.820
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.820
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.819
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.813
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.809
SB07G021250 Sorghum bicolor Sb07g021250 I 0.809
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.804
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.799
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.798
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.794
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.794
30169.m006527 Ricinus communis 30169.m006527 I 0.788
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.788
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.783
ppa005791m Prunus persica ppa005791m I 0.783
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.783
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.783
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.778
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.772
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.767
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.762
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.762
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.757
MDP0000269393 Malus x domestica MDP0000269393 I 0.751
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.749
SB03G028150 Sorghum bicolor Sb03g028150 I 0.745
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.741
mgf005649m Mimulus guttatus mgf005649m I 0.741
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.734
mgf001230m Mimulus guttatus mgf001230m I 0.720