PK14390.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK14390.1 T31697_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.825
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PK14390.1 RRM 32 89
PK14390.1 RRM 129 193
PK14390.1 RRM 261 323

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MDP0000796160 Malus x domestica MDP0000796160 I 0.962
ppa004961m Prunus persica ppa004961m I 0.957
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.941
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.941
28649.m000223 Ricinus communis 28649.m000223 I 0.935
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.914
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.904
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.904
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.888
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.872
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.840
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.835
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.830
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.830
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.825
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.825
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.819
SB01G034060 Sorghum bicolor Sb01g034060 I 0.814
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.809
SB07G021250 Sorghum bicolor Sb07g021250 I 0.809
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.804
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.803
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.802
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.789
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.783
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.783
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.783
30169.m006527 Ricinus communis 30169.m006527 I 0.783
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.778
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.778
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.772
ppa005791m Prunus persica ppa005791m I 0.772
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.772
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.762
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.762
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.762
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.757
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.746
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.746
SB03G028150 Sorghum bicolor Sb03g028150 I 0.745
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.743
mgf005649m Mimulus guttatus mgf005649m I 0.741
MDP0000269393 Malus x domestica MDP0000269393 I 0.741
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.734
mgf001230m Mimulus guttatus mgf001230m I 0.714