cassava3019.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava3019.m1 T49279_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.825
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
cassava3019.m1 RRM 19 76
cassava3019.m1 RRM 116 180
cassava3019.m1 RRM 248 310

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
28649.m000223 Ricinus communis 28649.m000223 I 0.962
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.957
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.957
ppa004961m Prunus persica ppa004961m I 0.946
PK14390.1 Cannabis sativa PK14390.1 I 0.941
MDP0000796160 Malus x domestica MDP0000796160 I 0.925
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.920
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.909
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.904
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.893
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.856
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.851
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.851
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.846
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.840
SB01G034060 Sorghum bicolor Sb01g034060 I 0.840
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.830
SB07G021250 Sorghum bicolor Sb07g021250 I 0.830
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.825
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.825
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.824
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.820
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.819
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.809
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.804
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.799
30169.m006527 Ricinus communis 30169.m006527 I 0.794
ppa005791m Prunus persica ppa005791m I 0.794
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.794
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.794
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.794
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.788
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.788
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.788
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.783
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.778
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.778
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.772
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.770
SB03G028150 Sorghum bicolor Sb03g028150 I 0.766
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.762
MDP0000269393 Malus x domestica MDP0000269393 I 0.762
mgf005649m Mimulus guttatus mgf005649m I 0.751
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.745
mgf001230m Mimulus guttatus mgf001230m I 0.735
BGIOSIBCE002789 Oryza indica BGIOSIBCE002789 N 0.701