GRMZM2G058039 (Zea mays)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GRMZM2G058039 T54056_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.767
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G058039_P01 RRM 19 78
GRMZM2G058039_P01 RRM 116 180
GRMZM2G058039_P01 RRM 243 304
GRMZM2G058039_P02 RRM 2 58
GRMZM2G058039_P03 RRM 2 58

Links

Other RRM family RBPs
Other Zea mays RBPs

48 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB03G028150 Sorghum bicolor Sb03g028150 I 0.973
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.883
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.862
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.803
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.798
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.793
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.793
ppa005791m Prunus persica ppa005791m I 0.793
30169.m006527 Ricinus communis 30169.m006527 I 0.793
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.793
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.788
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.787
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.787
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.787
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.783
BGIOSIBCE002789 Oryza indica BGIOSIBCE002789 N 0.782
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.777
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.777
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.771
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.767
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.767
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.767
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.762
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.761
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.761
MDP0000269393 Malus x domestica MDP0000269393 I 0.761
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.755
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.755
SB07G021250 Sorghum bicolor Sb07g021250 I 0.755
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.751
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.750
SB01G034060 Sorghum bicolor Sb01g034060 I 0.746
PK14390.1 Cannabis sativa PK14390.1 I 0.746
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.746
mgf005649m Mimulus guttatus mgf005649m I 0.746
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.745
28649.m000223 Ricinus communis 28649.m000223 I 0.745
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.745
ppa004961m Prunus persica ppa004961m I 0.741
mgf001230m Mimulus guttatus mgf001230m I 0.741
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.739
MDP0000796160 Malus x domestica MDP0000796160 I 0.730
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.730
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.723
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.714
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.709
MDP0000236223 Malus x domestica MDP0000236223 N 0.702