GRMZM2G178169 (Zea mays)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GRMZM2G178169 T54197_0.6 MaizeSequence (2009-Oct-16)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.777
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G178169_P01 RRM 19 76
GRMZM2G178169_P01 RRM 117 180
GRMZM2G178169_P01 RRM 248 310
GRMZM2G178169_P02 RRM 19 76
GRMZM2G178169_P02 RRM 117 176
GRMZM2G178169_P02 RRM 244 306

Links

Other RRM family RBPs
Other Zea mays RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB07G021250 Sorghum bicolor Sb07g021250 I 0.995
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.973
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.936
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.851
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.850
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.845
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.830
SB01G034060 Sorghum bicolor Sb01g034060 I 0.819
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.819
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.818
28649.m000223 Ricinus communis 28649.m000223 I 0.818
PK14390.1 Cannabis sativa PK14390.1 I 0.809
ppa004961m Prunus persica ppa004961m I 0.809
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.807
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.803
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.803
MDP0000796160 Malus x domestica MDP0000796160 I 0.798
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.795
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.793
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.790
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.790
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.785
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.785
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.780
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.780
30169.m006527 Ricinus communis 30169.m006527 I 0.780
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.780
ppa005791m Prunus persica ppa005791m I 0.780
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.780
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.777
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.777
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.769
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.769
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.769
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.765
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.763
SB03G028150 Sorghum bicolor Sb03g028150 I 0.763
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.763
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.757
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.755
MDP0000269393 Malus x domestica MDP0000269393 I 0.753
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.750
mgf005649m Mimulus guttatus mgf005649m I 0.749
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.735
mgf001230m Mimulus guttatus mgf001230m I 0.734