A9PHS8_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0004s12210 T45497_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.799
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s12210.1 RRM 19 76
POPTR_0004s12210.1 RRM 116 180
POPTR_0004s12210.1 RRM 248 310

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.957
28649.m000223 Ricinus communis 28649.m000223 I 0.941
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.941
ppa004961m Prunus persica ppa004961m I 0.925
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.920
PK14390.1 Cannabis sativa PK14390.1 I 0.914
MDP0000796160 Malus x domestica MDP0000796160 I 0.903
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.877
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.872
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.866
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.851
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.846
SB01G034060 Sorghum bicolor Sb01g034060 I 0.846
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.830
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.819
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.819
SB07G021250 Sorghum bicolor Sb07g021250 I 0.819
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.819
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.810
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.809
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.807
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.804
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.799
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.799
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.783
30169.m006527 Ricinus communis 30169.m006527 I 0.783
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.783
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.772
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.772
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.772
ppa005791m Prunus persica ppa005791m I 0.772
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.772
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.772
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.767
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.767
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.762
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.762
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.759
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.757
mgf005649m Mimulus guttatus mgf005649m I 0.751
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.751
SB03G028150 Sorghum bicolor Sb03g028150 I 0.750
MDP0000269393 Malus x domestica MDP0000269393 I 0.741
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.739
mgf001230m Mimulus guttatus mgf001230m I 0.714