BRADI3G36770 (Brachypodium distachyon)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 BRADI3G36770 T33248_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.762
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G36770.1 RRM 18 75
BRADI3G36770.1 RRM 114 179
BRADI3G36770.1 RRM 247 309
BRADI3G36770.3 RRM 18 75
BRADI3G36770.3 RRM 112 179
BRADI3G36770.3 RRM 247 309

Links

Other RRM family RBPs
Other Brachypodium distachyon RBPs

46 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.952
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.936
SB07G021250 Sorghum bicolor Sb07g021250 I 0.936
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.840
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.835
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.834
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.824
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.819
SB01G034060 Sorghum bicolor Sb01g034060 I 0.814
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.809
28649.m000223 Ricinus communis 28649.m000223 I 0.807
PK14390.1 Cannabis sativa PK14390.1 I 0.803
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.802
ppa004961m Prunus persica ppa004961m I 0.798
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.798
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.788
MDP0000796160 Malus x domestica MDP0000796160 I 0.787
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.787
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.781
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.777
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.777
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.771
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.771
ppa005791m Prunus persica ppa005791m I 0.766
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.766
30169.m006527 Ricinus communis 30169.m006527 I 0.766
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.766
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.762
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.762
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.761
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.755
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.755
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.755
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.755
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.755
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.751
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.749
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.745
SB03G028150 Sorghum bicolor Sb03g028150 I 0.743
mgf005649m Mimulus guttatus mgf005649m I 0.741
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.741
MDP0000269393 Malus x domestica MDP0000269393 I 0.734
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.733
mgf001230m Mimulus guttatus mgf001230m I 0.730
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.711