SB03G028150 (Sorghum bicolor)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Sb03g028150 T45961_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
e_gw1.81.40.1
M185_0.6 		Physcomitrella patens RACCUW RNAcompete
Ray et al.(2013)
RNCMPT00206 		0.771
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Sb03g028150.1 RRM 19 76
Sb03g028150.1 RRM 116 180
Sb03g028150.1 RRM 243 304

Links

Other RRM family RBPs
Other Sorghum bicolor RBPs

47 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GRMZM2G058039 Zea mays GRMZM2G058039 I 0.973
LOC_Os01g43170 Oryza sativa LOC_Os01g43170 I 0.909
BRADI2G43760 Brachypodium distachyon BRADI2G43760 I 0.887
Glyma14g30490.1 Glycine max Glyma14g30490.1 I 0.807
BGIOSIBCE002789 Oryza indica BGIOSIBCE002789 N 0.806
Glyma06g13130.1 Glycine max Glyma06g13130.1 I 0.802
PDK_20s1513061g004 Phoenix dactylifera PDK_20s1513061g004 I 0.798
Glyma04g41660.1 Glycine max Glyma04g41660.1 I 0.797
ppa005791m Prunus persica ppa005791m I 0.797
cassava7218.valid.m1 Manihot esculenta cassava7218.valid.m1 I 0.797
cassava7219.valid.m1 Manihot esculenta cassava7219.valid.m1 I 0.797
cassava29285.valid.m1 Manihot esculenta cassava29285.valid.m1 I 0.791
Glyma13g08170.1 Glycine max Glyma13g08170.1 I 0.791
30169.m006527 Ricinus communis 30169.m006527 I 0.791
Cucsa.202010 Cucumis sativus Cucsa.202010 I 0.791
Medtr3g124540 Medicago truncatula Medtr3g124540 I 0.787
XM_002865910.1 Arabidopsis lyrata fgenesh2_kg.8__1206__AT5G53180.1 I 0.775
GSVIVG00028703001 Vitis vinifera GSVIVG00028703001 I 0.775
gw1.326.8.1 Physcomitrella patens gw1.326.8.1 I 0.771
e_gw1.81.40.1 Physcomitrella patens e_gw1.81.40.1 D 0.771
ATPTB2 Arabidopsis thaliana AT5G53180-TAIR-G I 0.770
e_gw1.30.357.1 Selaginella moellendorfii e_gw1.30.357.1 I 0.769
LOC_Os08g33830 Oryza sativa LOC_Os08g33830 I 0.769
cassava3019.m1 Manihot esculenta cassava3019.m1 I 0.766
GSVIVG00011438001 Vitis vinifera GSVIVG00011438001 I 0.766
MDP0000269393 Malus x domestica MDP0000269393 I 0.765
GRMZM2G178169 Zea mays GRMZM2G178169 I 0.763
SB07G021250 Sorghum bicolor Sb07g021250 I 0.763
Glyma18g49580.1 Glycine max Glyma18g49580.1 I 0.759
Glyma09g37080.1 Glycine max Glyma09g37080.1 I 0.750
A9PHS8_POPTR Populus trichocarpa POPTR_0004s12210 I 0.750
mgf005649m Mimulus guttatus mgf005649m I 0.750
chr1.CM0141.270.nc Lotus japonicus chr1.CM0141.270.nc I 0.749
28649.m000223 Ricinus communis 28649.m000223 I 0.749
ppa004961m Prunus persica ppa004961m I 0.745
PK14390.1 Cannabis sativa PK14390.1 I 0.745
LOC_Os03g25980 Oryza sativa LOC_Os03g25980 I 0.743
BRADI3G36770 Brachypodium distachyon BRADI3G36770 I 0.743
SB01G034060 Sorghum bicolor Sb01g034060 I 0.739
mgf001230m Mimulus guttatus mgf001230m I 0.739
B9IK00_POPTR Populus trichocarpa POPTR_0017s12160 I 0.734
BRADI1G61200 Brachypodium distachyon BRADI1G61200 I 0.733
XM_002884247.1 Arabidopsis lyrata scaffold_300118.1 I 0.731
MDP0000796160 Malus x domestica MDP0000796160 I 0.729
PTB Arabidopsis thaliana AT3G01150-TAIR-G I 0.722
BGIOSIBCE011312 Oryza indica BGIOSIBCE011312 I 0.702
MDP0000236223 Malus x domestica MDP0000236223 N 0.701