RBFOX3 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000009563 T35564_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
A2BP1
M298_0.6 		Homo sapiens UGCAUG SELEX
Cook et al.(2011)
37_16537540 		0.928
a2bp1
M297_0.6 		Danio rerio GCAUG SELEX
Cook et al.(2011)
36_12574126 		0.928
A2BP1
M159_0.6 		Homo sapiens WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00168 		0.928
a2bp1
M118_0.6 		Drosophila melanogaster UGCAUG RNAcompete
Ray et al.(2013)
RNCMPT00123 		0.870
fox-1
M017_0.6 		Caenorhabditis elegans WGCAUGM RNAcompete
Ray et al.(2013)
RNCMPT00017 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000017588 RRM 121 189
ENSCJAP00000017598 RRM 101 169
ENSCJAP00000017606 RRM 101 169
ENSCJAP00000031956 RRM 101 169

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

154 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
87505 Helobdella robusta 87505 I 0.754
A4F5G6 Xenopus laevis A4F5G6 I 0.928
AAEL017168 Aedes aegypti AAEL017168 I 0.884
AAI55921 Xenopus laevis AAI55921 I 0.913
AAI69563 Xenopus laevis AAI69563 I 0.913
AGAP006089 Anopheles gambiae AGAP006089 I 0.884
amel4_ncbi_hmm20735 Apis mellifera amel4_ncbi_hmm20735 I 0.884
Ame_R006420 Ailuropoda melanoleuca Ame_R006420 I 0.986
Ame_R020997 Ailuropoda melanoleuca Ame_R020997 I 0.928
BGIBMGA006880 Bombyx mori BGIBMGA006880 I 0.855
Bm1_08900 Brugia malayi Bm1_08900 I 0.754
CAL91350 Xenopus laevis CAL91350 I 0.928
CAL91351 Xenopus laevis CAL91351 I 0.928
CBG02108 Caenorhabditis briggsae CBG02108 I 0.739
CBN11651 Caenorhabditis brenneri CBN11651 I 0.725
CJA09998 Caenorhabditis japonica CJA09998 I 0.739
CRE07377 Caenorhabditis remanei CRE07377 I 0.739
DGIL_AUG5s15027g5t1 Acyrtosiphon pisum DGIL_AUG5s15027g5t1 I 0.855
RBFOX1 Anolis carolinensis ENSACAG00000004013 I 0.913
ENSACAG00000011931 Anolis carolinensis ENSACAG00000011931 I 0.928
ENSACAG00000016093 Anolis carolinensis ENSACAG00000016093 I 0.971
RBFOX2 Anolis carolinensis ENSACAG00000016535 I 0.928
FOX1C_BOVIN Bos taurus ENSBTAG00000006280 I 0.986
FOX1A_BOVIN Bos taurus ENSBTAG00000007210 I 0.928
RBFOX2 Canis familiaris ENSCAFG00000001701 I 0.928
RBFOX3 Canis familiaris ENSCAFG00000005547 I 0.986
RBFOX1 Canis familiaris ENSCAFG00000019082 I 0.928
RBFOX2 Choloepus hoffmanni ENSCHOG00000002887 I 0.928
RBFOX1 Choloepus hoffmanni ENSCHOG00000012843 I 0.928
ENSCING00000013912 Ciona intestinalis ENSCING00000013912 I 0.826
LOC100414323 Callithrix jacchus ENSCJAG00000017351 I 0.928
LOC100385643 Callithrix jacchus ENSCJAG00000019456 I 0.928
RBFOX1 Cavia porcellus ENSCPOG00000011314 I 0.928
RBFOX3 Cavia porcellus ENSCPOG00000021703 I 0.986
RBFOX2 Cavia porcellus ENSCPOG00000022180 I 0.928
FP236187.1 Danio rerio ENSDARG00000010083 I 0.971
a2bp1 Danio rerio ENSDARG00000014746 D 0.928
rbfox1l Danio rerio ENSDARG00000021184 I 0.928
ENSDARG00000074310 Danio rerio ENSDARG00000074310 I 0.971
RBFOX1 Dasypus novemcinctus ENSDNOG00000012760 I 0.928
Rbfox2 Dipodomys ordii ENSDORG00000015003 I 0.928
LOC100066233 Equus caballus ENSECAG00000012667 I 0.928
LOC100069362 Equus caballus ENSECAG00000018923 I 0.928
RBFOX3 Equus caballus ENSECAG00000023811 I 0.986
RBFOX3 Erinaceus europaeus ENSEEUG00000013974 I 0.957
RBFOX2 Echinops telfairi ENSETEG00000005638 I 0.928
RBFOX1 Felis catus ENSFCAG00000008241 I 0.754
A2BP1 Homo sapiens ENSG00000078328 D 0.928
RBFOX2 Homo sapiens ENSG00000100320 I 0.928
RBFOX3 Homo sapiens ENSG00000167281 I 0.986
ENSGACG00000002138 Gasterosteus aculeatus ENSGACG00000002138 I 0.971
ENSGACG00000007174 Gasterosteus aculeatus ENSGACG00000007174 I 0.913
ENSGACG00000010757 Gasterosteus aculeatus ENSGACG00000010757 I 0.942
ENSGACG00000015968 Gasterosteus aculeatus ENSGACG00000015968 I 0.870
A2BP1 Gallus gallus ENSGALG00000007366 I 0.928
RBM9 Gallus gallus ENSGALG00000012540 I 0.928
RBFOX3 Gorilla gorilla ENSGGOG00000012546 I 0.986
RBFOX2 Gorilla gorilla ENSGGOG00000015598 I 0.797
RBFOX1 Gorilla gorilla ENSGGOG00000016871 I 0.928
RBFOX1 Loxodonta africana ENSLAFG00000011480 I 0.928
RBFOX3 Loxodonta africana ENSLAFG00000016623 I 0.986
RBFOX2 Loxodonta africana ENSLAFG00000027140 I 0.928
RBFOX2 Macropus eugenii ENSMEUG00000001547 I 0.739
RBFOX1 Macropus eugenii ENSMEUG00000012525 I 0.928
ENSMGAG00000005600 Meleagris gallopavo ENSMGAG00000005600 I 0.971
RBFOX1 Meleagris gallopavo ENSMGAG00000008606 I 0.928
RBFOX2 Microcebus murinus ENSMICG00000014135 I 0.000
RBFOX3 Microcebus murinus ENSMICG00000014898 I 0.986
RBFOX2 Myotis lucifugus ENSMLUG00000002676 I 0.928
RBFOX3 Myotis lucifugus ENSMLUG00000008895 I 0.986
RBFOX1 Myotis lucifugus ENSMLUG00000015896 I 0.928
LOC708209 Macaca mulatta ENSMMUG00000003458 I 0.928
A2D690_MACMU Macaca mulatta ENSMMUG00000014010 I 0.928
RBFOX3 Macaca mulatta ENSMMUG00000023028 I 0.986
RBFOX2 Monodelphis domestica ENSMODG00000001122 I 0.928
ENSMODG00000002089 Monodelphis domestica ENSMODG00000002089 I 0.971
RBFOX1 Monodelphis domestica ENSMODG00000005826 I 0.928
Rbfox1 Mus musculus ENSMUSG00000008658 I 0.928
Rbfox3 Mus musculus ENSMUSG00000025576 I 0.986
Rbfox2 Mus musculus ENSMUSG00000033565 I 0.928
RBFOX1 Ornithorhynchus anatinus ENSOANG00000002379 I 0.928
RBFOX2 Ornithorhynchus anatinus ENSOANG00000007489 I 0.928
RBFOX1 Oryctolagus cuniculus ENSOCUG00000001205 I 0.928
RBFOX3 Oryctolagus cuniculus ENSOCUG00000014217 I 0.971
RBFOX1 Otolemur garnettii ENSOGAG00000000363 I 0.928
RBFOX2 Otolemur garnettii ENSOGAG00000015996 I 0.928
RBFOX1 Ochotona princeps ENSOPRG00000006199 I 0.928
RBFOX2 Ochotona princeps ENSOPRG00000014878 I 0.928
RBFOX3 Ochotona princeps ENSOPRG00000016279 I 0.986
ENSORLG00000011269 Oryzias latipes ENSORLG00000011269 I 0.928
ENSORLG00000014948 Oryzias latipes ENSORLG00000014948 I 0.899
RBFOX3 Procavia capensis ENSPCAG00000001401 I 0.986
RBFOX1 Procavia capensis ENSPCAG00000002630 I 0.928
ENSPPYG00000007079 Pongo pygmaeus ENSPPYG00000007079 I 0.928
ENSPPYG00000008704 Pongo pygmaeus ENSPPYG00000008704 I 0.986
ENSPPYG00000011766 Pongo pygmaeus ENSPPYG00000011766 I 0.928
RBFOX1 Pan troglodytes ENSPTRG00000007744 I 0.928
RBFOX3 Pan troglodytes ENSPTRG00000009727 I 0.986
RBFOX2 Pan troglodytes ENSPTRG00000014305 I 0.928
RBFOX1 Pteropus vampyrus ENSPVAG00000013467 I 0.928
RBFOX3 Pteropus vampyrus ENSPVAG00000015243 I 0.986
A2bp1 Rattus norvegicus ENSRNOG00000002827 I 0.928
Hrnbp3 Rattus norvegicus ENSRNOG00000003386 I 0.986
Rbm9 Rattus norvegicus ENSRNOG00000004688 I 0.928
RBFOX2 Sus scrofa ENSSSCG00000000152 I 0.928
RBFOX1 Sus scrofa ENSSSCG00000007917 I 0.928
RBFOX1 Spermophilus tridecemlineatus ENSSTOG00000000322 I 0.928
RBFOX2 Spermophilus tridecemlineatus ENSSTOG00000014841 I 0.783
RBFOX2 Tupaia belangeri ENSTBEG00000003297 I 0.928
RBFOX1 Tupaia belangeri ENSTBEG00000009169 I 0.928
A2BP1 Taeniopygia guttata ENSTGUG00000004562 I 0.928
RBM9 Taeniopygia guttata ENSTGUG00000010808 I 0.928
ENSTNIG00000008088 Tetraodon nigroviridis ENSTNIG00000008088 I 0.928
ENSTNIG00000011278 Tetraodon nigroviridis ENSTNIG00000011278 I 0.971
ENSTRUG00000002748 Takifugu rubripes ENSTRUG00000002748 I 0.913
ENSTRUG00000004894 Takifugu rubripes ENSTRUG00000004894 I 0.971
ENSTRUG00000007739 Takifugu rubripes ENSTRUG00000007739 I 0.884
RBFOX1 Takifugu rubripes ENSTRUG00000013477 I 0.928
ENSTRUG00000015905 Takifugu rubripes ENSTRUG00000015905 I 0.928
RBFOX1 Tarsius syrichta ENSTSYG00000005334 I 0.000
RBFOX2 Tarsius syrichta ENSTSYG00000014123 I 0.928
RBFOX1 Tursiops truncatus ENSTTRG00000005700 I 0.928
RBFOX2 Tursiops truncatus ENSTTRG00000006922 I 0.928
RBFOX1 Vicugna pacos ENSVPAG00000001284 I 0.928
RBFOX2 Vicugna pacos ENSVPAG00000002824 I 0.928
rbm9 Xenopus tropicalis ENSXETG00000000231 I 0.928
a2bp1 Xenopus tropicalis ENSXETG00000005126 I 0.000
hrnbp3 Xenopus tropicalis ENSXETG00000020236 I 0.971
e_gw.493.13.1 Branchiostoma floridae e_gw.493.13.1 I 0.899
e_gw.534.13.1 Branchiostoma floridae e_gw.534.13.1 I 0.899
e_gw1.11.67.1 Lottia gigantea e_gw1.11.67.1 I 0.814
a2bp1 Drosophila melanogaster FBgn0052062 D 0.870
GF10597 Drosophila ananassae FBgn0087638 I 0.870
GG15438 Drosophila erecta FBgn0107689 I 0.870
GH14949 Drosophila grimshawi FBgn0122424 I 0.870
GI11474 Drosophila mojavensis FBgn0134235 I 0.870
GM25214 Drosophila sechellia FBgn0180074 I 0.870
GD14245 Drosophila simulans FBgn0185930 I 0.870
GJ13667 Drosophila virilis FBgn0200888 I 0.870
GK12272 Drosophila willistoni FBgn0214282 I 0.870
GE21749 Drosophila yakuba FBgn0238995 I 0.870
GA23828-RA Drosophila pseudoobscura FBgn0245227 I 0.855
fgeneshTA2_pg.C_scaffold_2000867 Trichoplax adhaerens fgeneshTA2_pg.C_scaffold_2000867 I 0.000
gw.34.129.1 Nematostella vectensis gw.34.129.1 I 0.797
gw1.3.244.1 Capitella teleta gw1.3.244.1 I 0.855
gw1.6.723.1 Daphnia pulex gw1.6.723.1 I 0.884
ISCW013123 Ixodes scapularis ISCW013123 I 0.899
LOAG_04679 Loa loa LOAG_04679 I 0.754
nasonia_NCBI_hmm28684 Nasonia vitripennis nasonia_NCBI_hmm28684 I 0.870
PHUM098700 Pediculus humanus PHUM098700 I 0.870
Sjc_0036900 Schistosoma japonicum Sjc_0036900 I 0.754
Smp_138880 Schistosoma mansoni Smp_138880 I 0.754
Smp_139980 Schistosoma mansoni Smp_139980 I 0.812
SNAPOd2T00019047001 Oikopleura dioica SNAPOd2T00019047001 I 0.725
fox-1 Caenorhabditis elegans T07D1.4 D 0.739
WUBG_05352 Wuchereria bancrofti WUBG_05352 I 0.754